Difference between revisions of "Part:BBa J428353"

 
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== Characterisation Studies ==
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===Cambridge 2022 JUMP DV Characterisation ===
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<ul>
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  <li>Summary</li>
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As part of our Bronze - Contribution criteria, Cambridge 2022 characterised 3 JUMP DV plasmids in DH5a <em>E. coli</em>, from the 2022 distribution kit plate 1, against increasing concentrations of ammonium sulphate. These were of varying copy number: pSC101 (low copy no.), pBBR1 (low-med. copy no.) and pUC (high copy no.) to investigate the effect of ammonium on different copy number burden.
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<li>Verdict</li>
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[[File:BBa_J428351-JUMP_DV_characterisation_image_1.png|400px|thumb|left|
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<center>'''Figure 1: Fluorescence Intensity of JUMP DVs with varying [NH4]2SO4 mM'''</center>]]
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DV pSC101 (low copy no.) : Ammonium enhances fluorescence intensity up to 540mM. Despite the fluorescence rate decrease, the maximum fluorescence increases as we increase ammonium to 540mM with the cells reaching their limit at 720mM. Therefore, ammonium sulphate can be added to the growth media of cells containing pSC101 DV in order to enhance the expression of the protein of interest (in place of the sfGFP).
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DV pBBR1 (low-med copy no.) : Ammonium enhances fluorescence intensity up to 360mM. Despite the fluorescence rate decrease, the maximum fluorescence increases as we increase ammonium to 360mM with the cells having lower expression at 540mM, reaching their limit at 720mM. Therefore, ammonium sulphate can be added to the growth media of cells containing pBBR1 DV in order to enhance the expression of the protein of interest (in place of the sfGFP).
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DV pUC (high copy no.) : For high copy number plasmids, we can report that any ammonium concentration is detrimental to the cells expression. The greatest fluorescence was recorded with 0mM of ammonium sulphate, with decreasing expression as it was increased.
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<br><br><br><li>Experience/Detailed Protocol: https://parts.igem.org/wiki/index.php?title=Part:BBa_J428351:Experience
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pJUMP28-1A KanR Type IIS Level 1 vector. Origin pUC (high copy number)
 
  
 
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<span class='h3bb'>Sequence and Features</span>
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==DNA Sequence and Features==
 
<partinfo>BBa_J428353 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_J428353 SequenceAndFeatures</partinfo>
  

Revision as of 23:52, 11 October 2022

pJUMP28-1A KanR Type IIS Level 1 vector. Origin pUC (high copy number)

Characterisation Studies

Cambridge 2022 JUMP DV Characterisation

  • Summary

    • As part of our Bronze - Contribution criteria, Cambridge 2022 characterised 3 JUMP DV plasmids in DH5a E. coli, from the 2022 distribution kit plate 1, against increasing concentrations of ammonium sulphate. These were of varying copy number: pSC101 (low copy no.), pBBR1 (low-med. copy no.) and pUC (high copy no.) to investigate the effect of ammonium on different copy number burden.

  • Verdict


    • Figure 1: Fluorescence Intensity of JUMP DVs with varying [NH4]2SO4 mM

    DV pSC101 (low copy no.) : Ammonium enhances fluorescence intensity up to 540mM. Despite the fluorescence rate decrease, the maximum fluorescence increases as we increase ammonium to 540mM with the cells reaching their limit at 720mM. Therefore, ammonium sulphate can be added to the growth media of cells containing pSC101 DV in order to enhance the expression of the protein of interest (in place of the sfGFP).

    DV pBBR1 (low-med copy no.) : Ammonium enhances fluorescence intensity up to 360mM. Despite the fluorescence rate decrease, the maximum fluorescence increases as we increase ammonium to 360mM with the cells having lower expression at 540mM, reaching their limit at 720mM. Therefore, ammonium sulphate can be added to the growth media of cells containing pBBR1 DV in order to enhance the expression of the protein of interest (in place of the sfGFP).

    DV pUC (high copy no.) : For high copy number plasmids, we can report that any ammonium concentration is detrimental to the cells expression. The greatest fluorescence was recorded with 0mM of ammonium sulphate, with decreasing expression as it was increased.




  • Experience/Detailed Protocol: https://parts.igem.org/wiki/index.php?title=Part:BBa_J428351:Experience


    DNA Sequence and Features


    Assembly Compatibility:
    • 10
      INCOMPATIBLE WITH RFC[10]
      Illegal prefix found at 2492
      Illegal suffix found at 16
    • 12
      INCOMPATIBLE WITH RFC[12]
      Plasmid lacks a prefix.
      Plasmid lacks a suffix.
      Illegal EcoRI site found at 2492
      Illegal SpeI site found at 17
      Illegal PstI site found at 31
      Illegal NotI site found at 24
      Illegal NotI site found at 2498
    • 21
      INCOMPATIBLE WITH RFC[21]
      Plasmid lacks a prefix.
      Plasmid lacks a suffix.
      Illegal EcoRI site found at 2492
    • 23
      INCOMPATIBLE WITH RFC[23]
      Illegal prefix found at 2492
      Illegal suffix found at 17
    • 25
      INCOMPATIBLE WITH RFC[25]
      Illegal prefix found at 2492
      Plasmid lacks a suffix.
      Illegal XbaI site found at 2507
      Illegal SpeI site found at 17
      Illegal PstI site found at 31
      Illegal NgoMIV site found at 1390
    • 1000
      INCOMPATIBLE WITH RFC[1000]
      Plasmid lacks a prefix.
      Plasmid lacks a suffix.
      Illegal SapI.rc site found at 2188