Difference between revisions of "Part:BBa K3893030"

Revision as of 19:31, 19 October 2021

Population control device (QS-based lysis protein oscilator)

Figure 1. SBOL Visual representation of the device

This device is an AHL induced transcriptional unit to express phiX174 lysis protein together with a TU for the constitutive expression of LuxI. It was assembled with a one-pot Level 2 Golden Gate reaction using BsmBI type IIS endonuclease.

This device is composed of the following standardized composite parts:

• BBa_K3893028: a Level 2 transcriptional unit constitutively expressing luxI gene (Golden Braid compatible)
• BBa_K3893029: a Level 2 transcriptional unit expresing phiX174 lysis protein under the control of the pux promoter (Golden Braid compatible)

Usage and Biology

Part engineering and DBTL cycle

The development of this part was performed following the steps of the Design-Build-Test-Learn (DBTL) cycle of synthetic biology. Here, we describe the different steps and the results obtained.

Design

This part is designed for delivering and releasing dsRNA molecules of the gene of interest in the context of controlled oscillations in the size of the bacterial population. However, we replaced the gene of interest by a reporter to test the effectiveness of part and to use it as a proxy to estimate the amount of lysis protein being expressed. To this end, LuxR-AHL transcription factor activates simultaneously the expression of GFP and the lysis protein PhiX174E.

Build

For this we planned a golden gate assembly with 3 levels using the Golden Braid assembly method from Valencia_UPV. First, we combined together two composite parts that were already in the Part Registry (BBa_K2656122 a Level 1 transcriptional unit expresing GFP under the control of the pux promoter and BBa_K2656114 a Level 1 transcriptional unit constitutively expressing luxR gene) to create part BBa_K3893028 .

Then we created 2 more Level 1 Transcripcional units using basic parts from the Valencia_UPV Part Collection: parts BBa_K3893026 (a Level 1 transcriptional unit constitutively expressing luxI gene) and BBa_K3893027 (a Level 1 transcriptional unit expresing phiX174 lysis protein under the control of the pLux promoter). This way, we combined these two parts and we created a new composite part BBa_K3893029. Finally, combining these two Level 2 parts we obtained a contruction with four transcricptional units implementing our initial design BBa_K3893030. For the design of part BBa_K3893026, which is a Level 1 transcriptional unit constitutively expressing luxI gene and a key component of the QS-based oscilator, we performed a smaller inned DBTL cycle including design, assembly (build), measurements (test), and model and characterization of the part (learn) using part BBa_K3893028 and contributing to characterize the pLux promoter (Part BBa_K2656003 which is the Golden Braid compatible, together with its Biobrick starndard sister part BBa_R0062) in the context of the transcriptional unit built in part BBa_K2656122.

Sequence and Features