Difference between revisions of "Part:BBa K3889010"
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This is a synthetically derived promoter sequence for the expression of genes in <i>Bacillus subtilis</i>.
 
This is a synthetically derived promoter sequence for the expression of genes in <i>Bacillus subtilis</i>.
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{| class=wikitable
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|-
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!Promoter
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!Sequence 5‘ → 3‘
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!Relative activity wrt P43 of GFP (%)
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!Standard deviation
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|-
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|SP126
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|AAAAATTATAAAAATGTGTTGACAAAGGGGGTCCTGTATGTTATAATAGCTT
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|29.07
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|0.23
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|-
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|SP146
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|AAAAATAACAAAAACGTGTTGACAATAAAGATTAACCGTGATATAATTAAAT
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|40.39
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|0.69
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|-
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|SP200
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|AAAAATTAGAAAAATGTGTTGACACTCGGACGAAACAATGGTATAATGGCAA
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|76.82
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|0.9
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|-}
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<p><strong>Relative</strong></p>
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<p><strong>Relative activity wrt P43 of GFP (%)</strong></p>
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<p><strong>activity wrt P43 of</strong></p>
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<p><strong>GFP (%)</strong></p>
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Revision as of 03:05, 17 October 2021


Bacillus Subtilis Synthetic Promoter 126

This is a synthetically derived promoter sequence for the expression of genes in Bacillus subtilis.

Promoter Sequence 5‘ → 3‘ Relative activity wrt P43 of GFP (%) Standard deviation
SP126 AAAAATTATAAAAATGTGTTGACAAAGGGGGTCCTGTATGTTATAATAGCTT 29.07 0.23
SP146 AAAAATAACAAAAACGTGTTGACAATAAAGATTAACCGTGATATAATTAAAT 40.39 0.69
SP200 AAAAATTAGAAAAATGTGTTGACACTCGGACGAAACAATGGTATAATGGCAA 76.82 0.9

Promoter

Sequence 5‘ → 3‘

Relative activity wrt P43 of GFP (%)

Standard

deviation

SP126

AAAAATTATAAAAATGTGTTGACAAAGGGGGTCCTGTATGTTATAATAGCTT

29.07

0.23

SP146

AAAAATAACAAAAACGTGTTGACAATAAAGATTAACCGTGATATAATTAAAT

40.39

0.69

SP200

AAAAATTAGAAAAATGTGTTGACACTCGGACGAAACAATGGTATAATGGCAA

76.82

0.9
Synthetic Promoters data from SP1-214[1]

Usage and Biology

SP126(BBa_K3889010), SP146(BBa_K3889011), SP200(BBa_K3889010) are a part of synthetic library promoters from Liu et al. (2018)[1]. These synthetic promoters are characterised to have constitutive expression, hence they can be used in general protein production. Since the library contains 214 synthetic promoters providing variability and robustness in expression, according to the system's need. All SP promoters have the following consensus sequences:


Based on this the promoters are as follows: T--IISER-Tirupati India--SP allignment.png


Modelling

We used SP126 with BBa_K1351033 for gene expression of SRTF1 (BBa_K3889100).

Parameters used:

Rate of SRTF1 production = 3.2246 x 103/day

Rate of SRTF 1degradation = 1.69/day

T--IISER-Tirupati India--SP126.jpg

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]



References

1. Liu, D., Mao, Z., Guo, J., Wei, L., Ma, H., Tang, Y., Chen, T., Wang, Z., & Zhao, X. (2018). Construction, Model-Based Analysis, and Characterization of a Promoter Library for Fine-Tuned Gene Expression in Bacillus subtilis. ACS Synthetic Biology, 7(7), 1785–1797. https://doi.org/10.1021/acssynbio.8b00115