Difference between revisions of "Talk:Catalog"
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#An [[/RBS strength calculator|RBS strength calculator]] should be available on RBS and coding sequence pages. | #An [[/RBS strength calculator|RBS strength calculator]] should be available on RBS and coding sequence pages. | ||
#Being able to enter parameter values into a new type of tables | #Being able to enter parameter values into a new type of tables | ||
| + | #Support for devices - allowing devices to be across multiple DNA fragments and with human-specified inputs and outputs | ||
| + | #Merge of main pages and design pages of parts | ||
#Copy and rename functionality for column sets | #Copy and rename functionality for column sets | ||
#Auto-translation to amino acid sequence for protein tags and modifiers | #Auto-translation to amino acid sequence for protein tags and modifiers | ||
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#Auto-detection of direction of protein coding sequences based on sequence | #Auto-detection of direction of protein coding sequences based on sequence | ||
#Auto-detection as to whether a protein coding sequence has a start and stop codon and therefore is complete, N-terminal half, C-terminal half or a domain; as part of this the start and stop codons could be automatically annotated in the feature list | #Auto-detection as to whether a protein coding sequence has a start and stop codon and therefore is complete, N-terminal half, C-terminal half or a domain; as part of this the start and stop codons could be automatically annotated in the feature list | ||
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#A method for importing promoters (and other parts) from ecocyc (and other similar databases). | #A method for importing promoters (and other parts) from ecocyc (and other similar databases). | ||
#Sites for transcriptional regulators should be [[/Transciptional regulator site identification|automatically identified]] for all promoters (and maybe other parts), add any identified sites as features to the promoters. | #Sites for transcriptional regulators should be [[/Transciptional regulator site identification|automatically identified]] for all promoters (and maybe other parts), add any identified sites as features to the promoters. | ||
Revision as of 13:32, 23 January 2009
Software tools
- Tool for marking parts to be included or not included in the distribution
- This might simply just be an excel spreadsheet initially of every part, how often it is used, QC info, summed size of all part pages etc.
- An RBS strength calculator should be available on RBS and coding sequence pages.
- Being able to enter parameter values into a new type of tables
- Support for devices - allowing devices to be across multiple DNA fragments and with human-specified inputs and outputs
- Merge of main pages and design pages of parts
- Copy and rename functionality for column sets
- Auto-translation to amino acid sequence for protein tags and modifiers
- Auto-detection of -10 and -35 sites in promoters
- Auto-detection of direction of protein coding sequences based on sequence
- Auto-detection as to whether a protein coding sequence has a start and stop codon and therefore is complete, N-terminal half, C-terminal half or a domain; as part of this the start and stop codons could be automatically annotated in the feature list
- A method for importing promoters (and other parts) from ecocyc (and other similar databases).
- Sites for transcriptional regulators should be automatically identified for all promoters (and maybe other parts), add any identified sites as features to the promoters.
- Auto-detection of the swissprot and kegg database references for protein coding regions
- Secondary structure predictor that can show a graphic of the predicted secondary structure for protein generators and terminators
- Auto-detection for shine-delgarno sequences in ribosome binding sites