Difference between revisions of "Part:BBa K3425043"
| Line 5: | Line 5: | ||
BF-10 is a camelid nanobody with high affinity for the HSP16.3 heat shock protein (<partinfo>BBa_K3425041</partinfo>) produced by <i>Mycobacterium tuberculosis</i> [1]. We chose this nanobody as the starting point of our modelling endeavours as it has proven binding to HSP16.3 and the small size of nanobodies has a range of benefits for a modular system in bacteria. | BF-10 is a camelid nanobody with high affinity for the HSP16.3 heat shock protein (<partinfo>BBa_K3425041</partinfo>) produced by <i>Mycobacterium tuberculosis</i> [1]. We chose this nanobody as the starting point of our modelling endeavours as it has proven binding to HSP16.3 and the small size of nanobodies has a range of benefits for a modular system in bacteria. | ||
| − | This particular part is designed to be used together with two other parts (see table below) as the agglutination construct for the NANOFLEX system, as a way to test nanobody functionality. In this case the nanobody [[Part:BBa_K3425043|<partinfo>BBa_K3425043</partinfo>]] specific to the <i>Mycobacterium tuberculosis</i> biomarker HSP 16.3 [[Part:BBa_K3425041|<partinfo>BBa_K3425041</partinfo>]] is displayed. | + | This particular part is designed to be used together with two other parts (see table below) as the agglutination construct for the NANOFLEX system, as a way to test nanobody functionality. In this case the nanobody [[Part:BBa_K3425043|<partinfo>BBa_K3425043</partinfo>]] specific to the <i>Mycobacterium tuberculosis</i> biomarker HSP 16.3 [[Part:BBa_K3425041|<partinfo>BBa_K3425041</partinfo>]] is displayed. Expression construct of this system is [[Part:BBa_K3425070|<partinfo>BBa_K3425070</partinfo>]]. |
Latest revision as of 23:21, 26 October 2020
B-F10: nanobody for HSP16.3
BF-10 is a camelid nanobody with high affinity for the HSP16.3 heat shock protein (BBa_K3425041) produced by Mycobacterium tuberculosis [1]. We chose this nanobody as the starting point of our modelling endeavours as it has proven binding to HSP16.3 and the small size of nanobodies has a range of benefits for a modular system in bacteria.
This particular part is designed to be used together with two other parts (see table below) as the agglutination construct for the NANOFLEX system, as a way to test nanobody functionality. In this case the nanobody BBa_K3425043 specific to the Mycobacterium tuberculosis biomarker HSP 16.3 BBa_K3425041 is displayed. Expression construct of this system is BBa_K3425070.
| Part number | Name | Description |
|---|---|---|
| BBa_K3425042 | pelB | signal peptide |
| BBa_K3425043 | B-F10 | HSP Nanobody |
| BBa_K3425044 | ehaA | Transmembrane domain |
Custom Type IIS design
This construct requires a signal peptide (pelB) at the N-terminal, the transmembrane domain (ehaA) at the C-terminal and the detection module (nanobody) inbetween. The idea behind this design is that, while pelB and ehaA are the same, the nanobody can be exchanged by a nanobody which binds the target you are interested in.
Each of these parts is designed to be cloned with iGEM Type IIS standard into the Level 0 backbone pSB1C00. The three parts together form one CDS, so except the first and last fusion sites, which are part of the standard, the others are custom and annotated in the sequences. The fusion sites are detailed in the table below.
By maintaining the three parts in separate pSB1C00 plasmids you can maintain more than one nanobody and assemble the construct to Level 1 backbones (such as pSB1K01) together with promoter, RBS and terminator in a 6-DNA parts one-step reaction (instead of 4-DNA parts).
| 5' Fusion site | Part | 3' Fusion site |
|---|---|---|
| FS_c (AATG) | pelB | pelB_FS |
| pelB_FS | B-F10 | ehaA_FS |
| ehaA_FS | ehaA | FS_e (GCTT) |
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
References
[1] Trilling, A. K., Ronde, H. de, Noteboom, L., Houwelingen, A. van, Roelse, M., Srivastava, S. K., Haasnoot, W., Jongsma, M. A., Kolk, A., Zuilhof, H., and Beekwilder, J. (2011) A Broad Set of Different Llama Antibodies Specific for a 16 kDa Heat Shock Protein of Mycobacterium tuberculosis. PLOS ONE. 6, e26754