Difference between revisions of "Part:BBa K2675004"

Revision as of 15:49, 11 October 2018

Tat-SAIRGA

This part is the mature arbitrium peptide of phage phi3T (SAIRGA) preceded by the Tat secretion signal.

Usage and Biology

The hexapeptide SAIRGA is the signalling molecule used for cell-to-cell communication [1]. To perform its quorum sensing function in the natural phi3T phage infection, SAIRGA needs to be secreted out of the cell. It is produced as an immature pre-pro-peptide, AimP (BBa_K2279001 and BBa_K2675001), that upon secretion is cleaved extracellularly to remove the secretion signal and release the mature hexapeptide. The mature peptide then enters cells and binds to its receptor protein AimR (BBa_K2279000 and BBa_K2675000). Binding of SAIRGA to AimR blocks the activator function of AimR that, in turn, facilitates a switch from lysogenic-to-lytic viral cycle. By acting as a negative regulator of AimR, the SAIRGA signal makes the lysogeny-to-lysis switch of phi3T phage dependent on the “quorum” of Bacillus cells.

In phi3T phage, SAIRGA is produced with specific secretion and protease-cleavage tags [1] that allow secretion and extracellular processing by Bacillus. Since we had no further information about this protease, we could not investigate the ability of Escherichia coli to produce a similar enzyme. Consequently, to produce SAIRGA in E. coli, we have decided to replace this tag by the Tat secretion signal of the csp2 gene of Corynebacterium glutamicum (Uniprot Q04985) know to function in E. coli and thus designed this part.

To express this Tat-SAIRGA in E. coli, the sequence was codon optimized for E. coli DH5α, a specific RBSs (BBa_K2675014) was designed with the Salis RBS Calculator [2, 3] and the peptide was placed under the control of the constitutive strong promoter (BBa_J23100). Thus, the composite part BBa_K2675044 was generated. This SAIRGA expression part did not behaved as predicted: it was not able to produce and release the mature hexapeptide SAIRGA in the culturing media of E. coli cells (for further details, visit the BBa_K2675044 page in the registry).

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
COMPATIBLE WITH RFC[21]
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
COMPATIBLE WITH RFC[1000]

@@ Line 3: / Line 3: @@
 <partinfo>BBa_K2675004 short</partinfo>
-TAT-SAIRGA
+This part is the mature arbitrium peptide of phage phi3T (SAIRGA) preceded by the Tat secretion signal.
-<!-- Add more about the biology of this part here
 ===Usage and Biology===
+The hexapeptide SAIRGA is the signalling molecule used for cell-to-cell communication [1]. To perform its quorum sensing function in the natural phi3T phage infection, SAIRGA needs to be secreted out of the cell. It is produced as an immature pre-pro-peptide, AimP ([[Part:BBa_K2279001|BBa_K2279001]] and [[Part:BBa_K2675001|BBa_K2675001]]), that upon secretion is cleaved extracellularly to remove the secretion signal and release the mature hexapeptide. The mature peptide then enters cells and binds to its receptor protein AimR ([[Part:BBa_K2279000|BBa_K2279000]] and [[Part:BBa_K2675000|BBa_K2675000]]). Binding of SAIRGA to AimR blocks the activator function of AimR that, in turn, facilitates a switch from lysogenic-to-lytic viral cycle. By acting as a negative regulator of AimR, the SAIRGA signal makes the lysogeny-to-lysis switch of phi3T phage dependent on the “quorum” of ''Bacillus'' cells.
+In phi3T phage, SAIRGA is produced with specific secretion and protease-cleavage tags [1] that allow secretion and extracellular processing by ''Bacillus''. Since we had no further information about this protease, we could not investigate the ability of ''Escherichia coli'' to produce a similar enzyme. Consequently, to produce SAIRGA in ''E. coli'', we have decided to replace this tag by the Tat secretion signal of the ''csp2'' gene of ''Corynebacterium glutamicum'' (Uniprot Q04985) know to function in ''E. coli'' and thus designed this part.
+To express this Tat-SAIRGA in ''E. coli'', the sequence was codon optimized for ''E. coli'' DH5α, a specific RBSs ([[Part:BBa_K2675014|BBa_K2675014]]) was designed with the Salis RBS Calculator [2, 3] and the peptide was placed under the control of the constitutive strong promoter ([[Part:BBa_J23100|BBa_J23100]]). Thus, the composite part [[Part:BBa_K2675044|BBa_K2675044]] was generated. This SAIRGA expression part did not behaved as predicted: it was not able to produce and release the mature hexapeptide SAIRGA in the culturing media of ''E. coli'' cells (for further details, visit the [[Part:BBa_K2675044|BBa_K2675044]] page in the registry).
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