Difference between revisions of "Part:BBa K1321090"
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For reference the cellulose binding domain binding capability to bacterial cellulose was measured relative to other cellulose binding domains when fused to sfGFP, the data for which can be seen here ([https://parts.igem.org/Part:BBa_K1321348 here])  - K1321348.
 
For reference the cellulose binding domain binding capability to bacterial cellulose was measured relative to other cellulose binding domains when fused to sfGFP, the data for which can be seen here ([https://parts.igem.org/Part:BBa_K1321348 here])  - K1321348.
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As a measure of the metal binding ability of Phytochelatin-dCBD attached onto bacterial cellulose, a filtration setup was developed and tested as displayed in the figure below. The setup includes a coffee press with a bacterial cellulose filter contained at the bottom supported by a 0.5 mm porous structure. A 50 mm diameter bacterial cellulose pellicle in the shape of a circle was used as the filtration membrane. Both pellicles were produced by ATCC 53582.
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[[File:Nickel_filtration_with_functionalised_and_non-functionalised_bacterial_cellulose.png]]
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Cell lysate was prepared by inoculating a single colony of Phytochelatin-dCBD in 10 ml of standard LB media overnight under standard conditions of 37 C 180 rpm shaking. This pre-culture was used for a 1000 ml grow up of LB media, which was incubated overnight under the same conditions. This media was spun down in a centrifuge pot, sonicated and resuspended in 5 ml of PBS solution.  The cell lysate was applied on to pasteurised bacterial cellulose with a spreader and dried at room temperature. For the control, a pellicle without any cell lysate applied was used.
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Results were obtained as shown in the figures below: [[File:IC14-Nickel_filtered_functionalised_cellulose.png]] 
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[[File:Nickel_filtered_cellulose_vs_functionalised.png]]
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[[File:IC14-Nickel_compared_to_cellulose_control.png]]
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The filtering can be summarised as shown in the figure below, showing better Nickel binding abilities of the functionalised cellulose in comparison to the control.
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[[File:IC14_Nickel_filtration_with_dCBD%2BPhytochelatin_functionalised_bacterial_cellulose.png]]
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[[File:IC14_Nickel_concentration_in_filtrate.png]]
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<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here

Revision as of 04:27, 2 November 2014

Phytochelatin (PC) EC20 + Linker-dCBD

Phytochelatin metal binding peptide fused N-terminally to dCBD, which contains an endogenous N-terminal linker sequence.

This construct is part of a library of fusions with cellulose binding domains which we designed to bind to cellulose and enable capture of heavy metals ([http://2014.igem.org/Team:Imperial/Functionalisation project page]). Other fusion parts with this metal binding protein can be seen in the table below: IC14-PC-part-table.PNG

Note that the start and stop codon, plus 6 bp either side of the sequence, are included the RFC25 prefix and suffix which is not shown.

For reference the cellulose binding domain binding capability to bacterial cellulose was measured relative to other cellulose binding domains when fused to sfGFP, the data for which can be seen here (here) - K1321348.

As a measure of the metal binding ability of Phytochelatin-dCBD attached onto bacterial cellulose, a filtration setup was developed and tested as displayed in the figure below. The setup includes a coffee press with a bacterial cellulose filter contained at the bottom supported by a 0.5 mm porous structure. A 50 mm diameter bacterial cellulose pellicle in the shape of a circle was used as the filtration membrane. Both pellicles were produced by ATCC 53582. Nickel filtration with functionalised and non-functionalised bacterial cellulose.png

Cell lysate was prepared by inoculating a single colony of Phytochelatin-dCBD in 10 ml of standard LB media overnight under standard conditions of 37 C 180 rpm shaking. This pre-culture was used for a 1000 ml grow up of LB media, which was incubated overnight under the same conditions. This media was spun down in a centrifuge pot, sonicated and resuspended in 5 ml of PBS solution. The cell lysate was applied on to pasteurised bacterial cellulose with a spreader and dried at room temperature. For the control, a pellicle without any cell lysate applied was used.

Results were obtained as shown in the figures below: IC14-Nickel filtered functionalised cellulose.png File:Nickel filtered cellulose vs functionalised.png IC14-Nickel compared to cellulose control.png

The filtering can be summarised as shown in the figure below, showing better Nickel binding abilities of the functionalised cellulose in comparison to the control.

IC14 Nickel filtration with dCBD+Phytochelatin functionalised bacterial cellulose.png IC14 Nickel concentration in filtrate.png






Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]