Difference between revisions of "Part:BBa K1031441"
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In order to fine-tune the performance of HcaR biosensor, we constructed a library of ''Pc'' constitutive promoters at different intensity. BBa_K1031441 is composed of three elements, the constitutive ''Pc'' promoter J23106[https://parts.igem.org/Part:BBa_J23106], coding sequence of HcaR and terminator B0015[https://parts.igem.org/Part:BBa_B0015]. ('''Fig 1''')
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In order to fine-tune the performance of HcaR biosensor, we constructed a library of ''Pc'' constitutive promoters, collocating with RBS (Ribosome Binding Site) at different intensity. BBa_K1031441 is composed of three elements, the constitutive ''Pc'' promoter J23106[https://parts.igem.org/Part:BBa_J23106], coding sequence of HcaR and terminator B0015[https://parts.igem.org/Part:BBa_B0015]. ('''Fig 1'''). This circuit expressing HcaR is collocated with RBS B0034.
  
 
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Induction ratio of HcaR biosensor library test that utilizes different'' Pc'' promoters to control the expression of HcaR. The dashed box refers to data for ''Ph''/J23106-HcaR biosensor circuit ('''Fig 2''').
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Induction ratio of HcaR biosensor library test utilizes different'' Pc'' promoters to control the expression of HcaR. The dashed box refers to data for ''Ph''/J23106-HcaR biosensor circuit ('''Fig 2''') in collocation with RBS B0034.
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This figure shows the biosensor circuit adopting J23106 obtains optimal performance.  
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This figure shows that when adopting B0034, the biosensor circuit adopting J23106 obtains the optimal performance.  
  
 
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Various inducers were used to test dose-response curve of ''Ph''/J23106-HcaR at the concentration at 10µM, 30µM, 100µM, 300µM and 1000µM ('''Fig 3''')
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PPA was used to test dose-response curve of ''Ph''/J23106-HcaR at the concentration at 1µM, 5µM, 10µM, 50µM, 100µM, 500µM and 1000µM ('''Fig 3''')
  
 
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'''Fig 3''' Dose response curve of biosensor circuit ''Ph''/J23106-HcaR. X-axis stands for concentration gradient of inducers at 10µM, 30µM, 100µM, 300µM and 1000µM. Different colors represent different kinds of inducers. Y-axis shows induction ratio reflected via fluorescence intensity.
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'''Fig 3''' Dose response curve of biosensor circuit ''Ph''/J23106-HcaR induced by PPA. X-axis stands for concentration gradient of inducers at 1µM, 5µM, 10µM, 50µM, 100µM, 500µM and 1000µM. Y-axis shows induction ratio reflected via fluorescence intensity.
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Revision as of 04:46, 25 September 2013

J23106-HcaR


Characterization

In order to fine-tune the performance of HcaR biosensor, we constructed a library of Pc constitutive promoters, collocating with RBS (Ribosome Binding Site) at different intensity. BBa_K1031441 is composed of three elements, the constitutive Pc promoter J23106[1], coding sequence of HcaR and terminator B0015[2]. (Fig 1). This circuit expressing HcaR is collocated with RBS B0034.

Fig 1 Construction of biosensor circuit Ph/J23106-HcaR


Sequence and Features

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 892
    Illegal AgeI site found at 565
  • 1000
    COMPATIBLE WITH RFC[1000]


Data shown

Induction ratio of HcaR biosensor library test utilizes different Pc promoters to control the expression of HcaR. The dashed box refers to data for Ph/J23106-HcaR biosensor circuit (Fig 2) in collocation with RBS B0034. This figure shows that when adopting B0034, the biosensor circuit adopting J23106 obtains the optimal performance.

Fig 2 Induction ratio of HcaR biosensor library test. Horizontal axis stands for different HcaR biosensor with Pc promoters of different strength. The expression strength of these constitutive promoters, J23113, J23109, J23114, J23105, J23106 is 21, 106, 256, 623, and 1185, respectively, according to the Partsregistry. Four kinds of aromatics shown with different color intensities, were tested following Test Protocol 1 [1]. Vertical axis represents the ON-OFF induction ratio. The dashed box refers to performance for Ph/J23106-HcaR biosensor circuit.


PPA was used to test dose-response curve of Ph/J23106-HcaR at the concentration at 1µM, 5µM, 10µM, 50µM, 100µM, 500µM and 1000µM (Fig 3)

Fig 3 Dose response curve of biosensor circuit Ph/J23106-HcaR induced by PPA. X-axis stands for concentration gradient of inducers at 1µM, 5µM, 10µM, 50µM, 100µM, 500µM and 1000µM. Y-axis shows induction ratio reflected via fluorescence intensity.