Difference between revisions of "Part:BBa K3599019"
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===Design & Experience=== | ===Design & Experience=== | ||
In iGEM2020 TPR_China Project, an aromatic sensor was constructed using Pa promoter, the eGFP ([[Part:BBa_K3599016|BBa_K3599016]]) and the sfGFP ([[Part:BBa_K3599017|BBa_K3599017]]) were both used as downstream reporters to form the sensor devices. To sense the aromatic compounds, PaaX under [[Part:BBa_K1031744|J23114]] constitutive promoter was used together. | In iGEM2020 TPR_China Project, an aromatic sensor was constructed using Pa promoter, the eGFP ([[Part:BBa_K3599016|BBa_K3599016]]) and the sfGFP ([[Part:BBa_K3599017|BBa_K3599017]]) were both used as downstream reporters to form the sensor devices. To sense the aromatic compounds, PaaX under [[Part:BBa_K1031744|J23114]] constitutive promoter was used together. | ||
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| + | To characterize the original function of PaaX sensor device, we use 2-Hydroxyphenylacetic Acid (2HA) as the corresponding aromatic compond. According to the biological knowledge, PaaX could sense the intracellular concentrations of phenylacetyl-CoA, of which the chemical structure is semilar with 2HA. | ||
====The fluorescence of the sensor induced by small molecules==== | ====The fluorescence of the sensor induced by small molecules==== | ||
Latest revision as of 15:42, 27 October 2020
Pa-eGFP
The sensor device of Pa promoter (BBa_K3599018), using enhanced GFP (BBa_K3599016) as reporter.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI.rc site found at 724
Illegal BsaI.rc site found at 1581
Design & Experience
In iGEM2020 TPR_China Project, an aromatic sensor was constructed using Pa promoter, the eGFP (BBa_K3599016) and the sfGFP (BBa_K3599017) were both used as downstream reporters to form the sensor devices. To sense the aromatic compounds, PaaX under J23114 constitutive promoter was used together.
To characterize the original function of PaaX sensor device, we use 2-Hydroxyphenylacetic Acid (2HA) as the corresponding aromatic compond. According to the biological knowledge, PaaX could sense the intracellular concentrations of phenylacetyl-CoA, of which the chemical structure is semilar with 2HA.
The fluorescence of the sensor induced by small molecules
Through the corresponding small molecule sensing experiment, except Dmpr sensor, all our sensors have great induction effects on its corresponding aromatic small molecules. Among which NahR-sfGFP was the best! It is 63 times of the negative control.And here we can see that Xyls-sfGFP is 18 times of the Xyls-GFP( BBa_K1031911). And what surprises us is that Paax sensor also has a good response effect to small molecules, which has not been detected before.
The fluorescence of the sensor induced by PAN
And here is the fluorescence of different sensors induced by PAN.This data shows the same result that NahR-sfGFP responded best.
