Difference between revisions of "Part:BBa K525304"
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[[Image:Bielefeld_2011_304_Growthcurve1.png|600px|center|thumb| '''Figure 1: Growthcurve of ''E. coli'' KRX expressing the fusion protein of Sgse and mCherry RFP with and without induction. A curve depicting KRX wildtype is shown for comparsion. After induction at approximately 6 h the OD<sub>600</sub> of the induced K525304 visibly drops when compared to the uninduced culture. Both cultures grow significantly slower than KRX wildtype.''']] | [[Image:Bielefeld_2011_304_Growthcurve1.png|600px|center|thumb| '''Figure 1: Growthcurve of ''E. coli'' KRX expressing the fusion protein of Sgse and mCherry RFP with and without induction. A curve depicting KRX wildtype is shown for comparsion. After induction at approximately 6 h the OD<sub>600</sub> of the induced K525304 visibly drops when compared to the uninduced culture. Both cultures grow significantly slower than KRX wildtype.''']] | ||
| − | [[Image:Bielefeld_2011_304_RFU_OD.png|600px|center|thumb| '''Figure 2: RFU to OD<sub>600</sub> ratio of ''E. coli'' KRX expressing the fusion protein of Sgse and mCherry RFP with and without induction. A curve depicting KRX wildtype is shown for comparsion.''']] | + | [[Image:Bielefeld_2011_304_RFU_OD.png|600px|center|thumb| '''Figure 2: RFU to OD<sub>600</sub> ratio of ''E. coli'' KRX expressing the fusion protein of Sgse and mCherry RFP with and without induction. A curve depicting KRX wildtype is shown for comparsion. After induction at approximately 6 h the RFU to OD ratio starts to rise in the induced culture. Compared to the uninduced culture the ratio is roughly two times higher. The KRX wildtype shows no variation in the RFU to OD ratio.''']] |
Revision as of 22:46, 21 September 2011
Fusion Protein of S-Layer SgsE and mCherry RFP
Fusion protein of S-layer SgsE and mCherry RFP
S-layers (crystalline bacterial surface layer) are crystal-like layers consisting of multiple protein monomers and can be found in various (archae-)bacteria. They constitute the outermost part of the cell wall. Especially their ability for self-assembly into distinct geometries is of scientific interest. At phase boundaries, in solutions and on a variety of surfaces they form different lattice structures. The geometry and arrangement is determined by the C-terminal self assembly-domain, which is specific for each S-layer protein. The most common lattice geometries are oblique, square and hexagonal. By modifying the characteristics of the S-layer through combination with functional groups and protein domains as well as their defined position and orientation to eachother (determined by the S-layer geometry) it is possible to realize various practical applications ([http://onlinelibrary.wiley.com/doi/10.1111/j.1574-6968.2006.00573.x/full Sleytr et al., 2007]).
Usage and Biology
S-layer proteins can be used as scaffold for nanobiotechnological applications and devices by e.g. fusing the S-layer's self-assembly domain to other functional protein domains. It is possible to coat surfaces and liposomes with S-layers. A big advantage of S-layers: after expressing in E. coli and purification, the nanobiotechnological system is cell-free. This enhances the biological security of a device.
This fluorescent S-layer fusion protein is used to characterize purification methods and the S-layer's ability to self-assemble on surfaces. It is also possible to use the characteristic of mCherry as a pH indicator ([http://pubs.acs.org/doi/abs/10.1021/bm901071b Kainz et al., 2010]).
Important parameters
| Experiment | Characteristic | Result |
|---|---|---|
| Expression (E. coli) | Localisation | Inclusion body |
| Compatibility | E. coli KRX and BL21(DE3) | |
| Induction of expression | expression of T7 polymerase + IPTG or lactose | |
| Specific growth rate (un-/induced) | 0.128 h-1 / 0.094 h-1 | |
| Doubling time (un-/induced) | 5.41 h / 7.39 h | |
| Purification | Molecular weight | 109.9 kDa |
| Theoretical pI | 5.70 | |
| Excitation / emission | 587 / 610 nm | |
| Immobilization behaviour | Immobilization time | 4 h |
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 167
Illegal BglII site found at 1022 - 23COMPATIBLE WITH RFC[23]
- 25INCOMPATIBLE WITH RFC[25]Illegal NgoMIV site found at 76
Illegal AgeI site found at 3112 - 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI site found at 1657
Expression in E. coli
The SgsE (K525301) gen was fused with a mCherry RFP (BBa_J18932) using [http://2011.igem.org/Team:Bielefeld-Germany/Protocols#Gibson_assembly Gibson assembly] for characterization.
The SgsE|mCherry RFP fusion protein was overexpressed in E. coli KRX after induction of T7 polymerase by supplementation of 0,1 % L-rhamnose and 1 mM IPTG using the [http://2011.igem.org/Team:Bielefeld-Germany/Protocols/Downstream-processing#Expression_of_S-layer_genes_in_E._coli autinduction protocol] from promega.
