Difference between revisions of "Part:BBa K404118"

 
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__NOTOC__
 
__NOTOC__
 
<partinfo>BBa_K404118 short</partinfo>
 
<partinfo>BBa_K404118 short</partinfo>
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{| style="color:black" cellpadding="6" cellspacing="1" border="2" align="right"
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! colspan="2" style="background:#66bbff;"|[https://parts.igem.org/Part:BBa_K404118 [AAV2]-left-ITR_pCMV_betaglobin]
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|-
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! colspan="2"|[[Image:Freiburg10_Vectorplasmid precursors 5.png|200px]]
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|-
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|'''BioBrick Nr.'''
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|[https://parts.igem.org/Part:BBa_K404118 BBa_K404118]
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|-
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|'''RFC standard'''
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|[https://parts.igem.org/Help:Assembly_standard_10 RFC 10]
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|-
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|'''Requirement'''
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|pSB1C3<br>
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|-
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|'''Source'''
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|pAAV_MCS provided by Stratagene
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|-
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|'''Submitted by'''
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|[http://2010.igem.org/Team:Freiburg_Bioware FreiGEM 2010]
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|}
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<br />
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<p style="text-align:justify;">
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[[Image:Freiburg10_Vectorplasmid precursors 5.png|left|thumb|300px]]
 
<br/>
 
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<br/>
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<br/>
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<br/><br/><br/><br/><br/><br/><br/><br/><br/><br/>
  
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<h1><span style="color: windowtext;">[AAV2]-left-ITR_phTERT_betaglobin</span></h1>
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<p class="MsoNormal">&nbsp;</p>
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<p class="MsoNormal"><span
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style="font-size: 10pt; line-height: 115%;">Producing
 +
recombinant virus particles for therapeutical applications is, besides
 +
specific
 +
cell targeting, purification and quantification assays of AAV-2, one
 +
intention
 +
of the Virus Construction Kit provided by the iGEM team
 +
Freiburg_Bioware 2010.
 +
For obtaining a modular toolkit, the complex biological system of the
 +
Adeno-associated virus serotype 2 was examined by an exhaustive
 +
literature
 +
search. Subsequently, the essential components for AAV-2 particle
 +
production
 +
were extracted and redesigned to match the iGEM standard.</span></p>
 +
<p class="MsoNormal"><span
 +
style="font-size: 10pt; line-height: 115%;">The provided
 +
tripartite system is independent of a superinfection&nbsp;
 +
&nbsp;of Adeno- or herpes
 +
simplex viruses since the genes encoding the required helper-proteins
 +
are
 +
co-transfected. Inside the eukaryotic host cell, the DNA sequence
 +
containing
 +
the inverted terminal repeats (ITRs) is extracted and later
 +
encapsidated into
 +
the preformed capsids after production of single-stranded DNA.
 +
Consequently,
 +
this plasmid is known as the vector plasmid (pGOI). Promoter, <i>beta-globin</i>
 +
intron and the hGH terminator signal are flanked by the ITRs (ITRs,
 +
BBa_K404100
 +
and BBa_K404101) and regulate transgene expression. The vector plasmid
 +
containing the desired gene of interest is cotransfected with the
 +
RepCap
 +
plasmid (BBa_K404001, BBa_K404002 or BBa_K404003) and the pHelper
 +
plasmid.&nbsp; </span></p>
 +
<p class="MsoNormal"><span
 +
style="font-size: 10pt; line-height: 115%;">Several
 +
assembly steps have to be performed in order to obtain the fully
 +
assembled vector
 +
plasmid ensuring a layer of specificity by using a tumor-specific
 +
promoter
 +
phTERT (</span><span
 +
style="font-size: 10pt; line-height: 115%;">BBa_K404106)</span><span
 +
style="font-size: 10pt; line-height: 115%;">.&nbsp;
 +
Facilitating the cloning steps the
 +
iGEM team Freiburg_Bioware 2010 provide the 5´nucleotide components in
 +
respect
 +
to the desired gene of interest which are the left inverted terminal
 +
repeat (</span><span
 +
style="font-size: 10pt; line-height: 115%;">BBa_K404100</span><span
 +
style="font-size: 10pt; line-height: 115%;">) followed by
 +
the phTERT promoter (</span><span
 +
style="font-size: 10pt; line-height: 115%;">BBa_K404106) and
 +
a putative
 +
enhancer-element (BBa_K404107). </span></p>
 +
<p class="MsoNormal">&nbsp;</p>
 +
</div>
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</body>
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<br><br><br><br><br>
  
  
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<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here
 
===Usage and Biology===
 
===Usage and Biology===
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<!-- -->
 
<!-- -->

Latest revision as of 12:31, 31 October 2010

[AAV2]-left-ITR_phTERT_betaglobin

[AAV2-left-ITR_pCMV_betaglobin]
Freiburg10 Vectorplasmid precursors 5.png
BioBrick Nr. BBa_K404118
RFC standard RFC 10
Requirement pSB1C3
Source pAAV_MCS provided by Stratagene
Submitted by [http://2010.igem.org/Team:Freiburg_Bioware FreiGEM 2010]


Freiburg10 Vectorplasmid precursors 5.png














[AAV2]-left-ITR_phTERT_betaglobin

 

Producing recombinant virus particles for therapeutical applications is, besides specific cell targeting, purification and quantification assays of AAV-2, one intention of the Virus Construction Kit provided by the iGEM team Freiburg_Bioware 2010. For obtaining a modular toolkit, the complex biological system of the Adeno-associated virus serotype 2 was examined by an exhaustive literature search. Subsequently, the essential components for AAV-2 particle production were extracted and redesigned to match the iGEM standard.

The provided tripartite system is independent of a superinfection   of Adeno- or herpes simplex viruses since the genes encoding the required helper-proteins are co-transfected. Inside the eukaryotic host cell, the DNA sequence containing the inverted terminal repeats (ITRs) is extracted and later encapsidated into the preformed capsids after production of single-stranded DNA. Consequently, this plasmid is known as the vector plasmid (pGOI). Promoter, beta-globin intron and the hGH terminator signal are flanked by the ITRs (ITRs, BBa_K404100 and BBa_K404101) and regulate transgene expression. The vector plasmid containing the desired gene of interest is cotransfected with the RepCap plasmid (BBa_K404001, BBa_K404002 or BBa_K404003) and the pHelper plasmid. 

Several assembly steps have to be performed in order to obtain the fully assembled vector plasmid ensuring a layer of specificity by using a tumor-specific promoter phTERT (BBa_K404106).  Facilitating the cloning steps the iGEM team Freiburg_Bioware 2010 provide the 5´nucleotide components in respect to the desired gene of interest which are the left inverted terminal repeat (BBa_K404100) followed by the phTERT promoter (BBa_K404106) and a putative enhancer-element (BBa_K404107).

 







Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]