Difference between revisions of "Part:BBa K404114"

 
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__NOTOC__
 
__NOTOC__
 
<partinfo>BBa_K404114 short</partinfo>
 
<partinfo>BBa_K404114 short</partinfo>
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<br />
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{| style="color:black" cellpadding="6" cellspacing="1" border="2" align="right"
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! colspan="2" style="background:#66bbff;"|[https://parts.igem.org/Part:BBa_K404114 [AAV2]-left-ITR_pCMV]
 +
|-
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! colspan="2"|[[Image:Freiburg10_Vectorplasmid precursors 1.png|200px]]
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|-
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|'''BioBrick Nr.'''
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|[https://parts.igem.org/Part:BBa_K404114 BBa_K404114]
 +
|-
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|'''RFC standard'''
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|[https://parts.igem.org/Help:Assembly_standard_10 RFC 10]
 +
|-
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|'''Requirement'''
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|pSB1C3<br>
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|-
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|'''Source'''
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|pAAV_MCS provided by Stratagene
 +
|-
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|'''Submitted by'''
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|[http://2010.igem.org/Team:Freiburg_Bioware FreiGEM 2010]
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|}
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<br />
  
[[Image:Freiburg10_Vectorplasmid precursors 1.png|thumb|center|480px]]
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[[Image:Freiburg10_Vectorplasmid precursors 1.png|left|thumb|480px]]<br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br /><br />
 
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<head>
 
<head>
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<body lang="EN-US">
 
<body lang="EN-US">
 
<div class="WordSection1">
 
<div class="WordSection1">
<p class="MsoNormal"><span class="apple-style-span"><b><span
+
<p class="MsoNormal"><span class="apple-style-span"><b><u><span
  style="font-size: 14.5pt; line-height: 115%; font-family: &quot;Arial&quot;,&quot;sans-serif&quot;;"></span></b></span><br>
+
  style="font-size: 14.5pt; line-height: 115%; font-family: &quot;Arial&quot;,&quot;sans-serif&quot;;">[AAV2]-left-ITR_pCMV</span></u></b></span></p>
<span style="font-size: 10pt; line-height: 115%;">Producing
+
<p class="MsoNormal" style="text-align: justify;"><span
recombinant virus particles for therapeutical applications is, besides
+
style="font-size: 10pt; line-height: 115%;">Producing
specific
+
recombinant virus particles for therapeutical applications
cell targeting, purification and quantification assays of AAV-2, one
+
is, besides specific cell targeting, purification and quantification
intention
+
assays of
of the Virus Construction Kit provided by the iGEM team
+
AAV-2, one intention of the Virus Construction Kit provided by the iGEM
Freiburg_Bioware 2010.
+
team
For obtaining a modular toolkit, the complex biological system of the
+
Freiburg_Bioware 2010. For obtaining a modular toolkit, the complex
Adeno-associated virus serotype 2 was examined by an exhaustive
+
biological
literature
+
system of the Adeno-associated virus serotype 2 was examined by an
search. Subsequently, the essential components for AAV-2 particle
+
exhaustive
production
+
literature search. Subsequently, the essential components for AAV-2
were extracted and redesigned to match the iGEM standard.</span></p>
+
particle
<p class="MsoNormal"><span
+
production were extracted and redesigned to match the iGEM standard.</span></p>
 +
<p class="MsoNormal" style="text-align: justify;"><span
 
  style="font-size: 10pt; line-height: 115%;">The provided
 
  style="font-size: 10pt; line-height: 115%;">The provided
tripartite system is independent of a superinfection&nbsp; of
+
tripartite system is independent of a
Adeno- or herpes
+
superinfection&nbsp; of Adeno- or herpes simplex viruses since the
simplex viruses since the genes encoding the required helper-proteins
+
genes encoding
are
+
the required helper-proteins are co-transfected. Inside the eukaryotic
co-transfected. Inside the eukaryotic host cell, the DNA sequence
+
host
containing
+
cell, the DNA sequence containing the inverted terminal repeats (ITRs)
the inverted terminal repeats (ITRs) is extracted and later
+
is extracted
encapsidated into
+
and later encapsidated into the preformed capsids after production of
the preformed capsids after production of single-stranded DNA.
+
single-stranded DNA. Consequently, this plasmid is known as the vector
Consequently,
+
plasmid
this plasmid is known as the vector plasmid (pGOI). Promoter, <i>beta-globin</i>
+
(pGOI). Promoter, <i>beta-globin</i> intron and the hGH
intron and the hGH terminator signal are flanked by the ITRs (ITRs,
+
terminator signal are
BBa_K404100
+
flanked by the ITRs (ITRs, BBa_K404100 and BBa_K404101) and regulate
and BBa_K404101) and regulate transgene expression. The vector plasmid
+
transgene
containing the desired gene of interest is cotransfected with the
+
expression. The vector plasmid containing the desired gene of interest
RepCap
+
is
plasmid (BBa_K404001, BBa_K404002 or BBa_K404003) and the pHelper
+
cotransfected with the RepCap plasmid (BBa_K404001, BBa_K404002 or
plasmid. To
+
BBa_K404003)
obtain the fully assembled vector plasmid, several assembly steps have
+
and the pHelper plasmid. To obtain the fully assembled vector plasmid,
to be
+
several
performed.&nbsp; </span></p>
+
assembly steps have to be performed.&nbsp; </span></p>
<p class="MsoNormal"><span
+
<p class="MsoNormal" style="text-align: justify;"><span
  style="font-size: 10pt; line-height: 115%;">Facilitating
+
  style="font-size: 10pt; line-height: 115%;">Facilitating the
the cloning steps, the iGEM team Freiburg_Bioware 2010 provides the
+
cloning steps, the iGEM team
5´nucleotide components in respect to the desired gene of interest,
+
Freiburg_Bioware 2010 provides the 5´nucleotide components in respect
consisting
+
to the
of the left inverted terminal repeat (</span><span
+
desired gene of interest, consisting of the left inverted terminal
 +
repeat (</span><span
 
  style="font-size: 10pt; line-height: 115%;">BBa_K404100</span><span
 
  style="font-size: 10pt; line-height: 115%;">BBa_K404100</span><span
 
  style="font-size: 10pt; line-height: 115%;">) followed by
 
  style="font-size: 10pt; line-height: 115%;">) followed by
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 +
 +
 +
  
  

Latest revision as of 15:48, 27 October 2010

[AAV2]-left-ITR_pCMV

[AAV2-left-ITR_pCMV]
Freiburg10 Vectorplasmid precursors 1.png
BioBrick Nr. BBa_K404114
RFC standard RFC 10
Requirement pSB1C3
Source pAAV_MCS provided by Stratagene
Submitted by [http://2010.igem.org/Team:Freiburg_Bioware FreiGEM 2010]


Freiburg10 Vectorplasmid precursors 1.png















[AAV2]-left-ITR_pCMV

Producing recombinant virus particles for therapeutical applications is, besides specific cell targeting, purification and quantification assays of AAV-2, one intention of the Virus Construction Kit provided by the iGEM team Freiburg_Bioware 2010. For obtaining a modular toolkit, the complex biological system of the Adeno-associated virus serotype 2 was examined by an exhaustive literature search. Subsequently, the essential components for AAV-2 particle production were extracted and redesigned to match the iGEM standard.

The provided tripartite system is independent of a superinfection  of Adeno- or herpes simplex viruses since the genes encoding the required helper-proteins are co-transfected. Inside the eukaryotic host cell, the DNA sequence containing the inverted terminal repeats (ITRs) is extracted and later encapsidated into the preformed capsids after production of single-stranded DNA. Consequently, this plasmid is known as the vector plasmid (pGOI). Promoter, beta-globin intron and the hGH terminator signal are flanked by the ITRs (ITRs, BBa_K404100 and BBa_K404101) and regulate transgene expression. The vector plasmid containing the desired gene of interest is cotransfected with the RepCap plasmid (BBa_K404001, BBa_K404002 or BBa_K404003) and the pHelper plasmid. To obtain the fully assembled vector plasmid, several assembly steps have to be performed. 

Facilitating the cloning steps, the iGEM team Freiburg_Bioware 2010 provides the 5´nucleotide components in respect to the desired gene of interest, consisting of the left inverted terminal repeat (BBa_K404100) followed by the CMV promoter (BBa_K404102).

 




Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]