Difference between revisions of "Part:BBa K3117029:Experience"
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===Applications of BBa_K3117029===
 
===Applications of BBa_K3117029===
  
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Usage of the composite part by the iGEM team FAU_Erlangen:
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Usage of the composite part by the iGEM team FAU_Erlangen
  
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The construct 2b (K2b) was synthesized by IDT. It was cloned into the expression vector pSEC/tag2/Hygro\C\-\OK by Gibson Assembly. Our protein was under control of the CMV promotor ensuring a high-level constitutive expression. Afterwards, the construct was brought into HEK293T cells with either calcium phosphate transfection or lipofection.
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The construct 1 (K1) was synthesized by IDT. It was cloned into the expression vector pSEC/tag2/Hygro\C\-\OK by Gibson Assembly. Our proteinsequence was under control of the CMV promotor ensuring a high-level constitutive expression. Afterwards, the construct was brought into HEK293T cells with either calcium phosphate transfection or lipofection. The accuracy of the inserted DNA after cloning was confirmed with sequencing. The data is depicted in Fig. 1.
  
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The accuracy of the inserted DNA after cloning was confirmed with sequencing. The data is depicted in Fig. 1.
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[[File:T--FAU_Erlangen--Bild_Sequencing_K1_Results_Composite_part.png|thumb|center|800px|'''Figure 1''': Sequencing data of K1]]
  
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Fig. 2 shows the western blot of the harvest after transfection into HEK 293T cells. For detection, the His-Tag in the K1 sequence (<partinfo>BBa_K3117005</partinfo>) provides the opportunity to be used as a target for a primary antibody in a western blot. K1 can be seen at expected height (54 kDa). The presence of K1 in the medium proves the function of the Igk leader (<partinfo>BBa_K3117006</partinfo>), which is directing the protein into the secretory pathway.
  
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Bild Sequencing K2b
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[[File:T--FAU_Erlangen--Bild_Sequencing_Ernte_Results_Composite_part.png|thumb|center|200px|'''Figure 2''': Western blot of the harvest after transfection into HEK 293T cells with an anti His-Tag antibody]]
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Figure 1: Sequencing data of the complete K2b
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Fig. 2 shows the harvest after transfection into HEK 293T cells in a western blot. For detection, the His-Tag in the K2b sequence (BBa_K3117005) provides the opportunity to be used as a target for a primary antibody in a western blot.
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Furthermore the His-Tag (<partinfo>BBa_K3117005</partinfo>) in K1 allows purification of the protein with HisTrap columns. The western blot after this purification is shown in Fig. 3, showing the remaining presence of the protein after this step.
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K2b can be seen at expected height (41 kDa). Presence of K2b in the medium proves the function of the Igk leader (BBa_K3117006), which is directing the protein into the secretory pathway.
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Bild Ernte
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Figure 2: Western blot of the harvest after transfection into HEK 293T cells with an anti-His-Tag antibody
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Furthermore the His-Tag (BBa_K3117005) in K2b allows purification of the protein with HisTrap columns. The western blot after this purification is shown in Fig. 3, showing the remaining presence of the protein after this step.  
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Bild Aufreinigung
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Figure 3: Western blot of the purified protein with HisTrap columns  with an anti-His_tag antibody
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For the SpyTag/SpyCatcher reaction the protein K2b was added to the protein K2a (BBa_K3117026). A height of 83 kDa was expected in the afterwards performed western blot, depicted in Fig 4. A specific band appeared after adding the two products, but this band was running at ~120 kDa. This size could be explained by formation of trimeric protein (Schoene, Fierer, Bennett, & Howarth, 2014).
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Bild TagCatcher
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Figure 4: Western blot after SpyTag/SpyCatcher reaction
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[[File:T--FAU_Erlangen--Bild_Sequencing_Aufreinigung_Results_Composite_part.png|thumb|center|150px|'''Figure 3''': Western blot of the constructs after the purification via HisTrap]]
  
 
===User Reviews===
 
===User Reviews===

Latest revision as of 20:32, 21 October 2019


This experience page is provided so that any user may enter their experience using this part.
Please enter how you used this part and how it worked out.

Applications of BBa_K3117029

Usage of the composite part by the iGEM team FAU_Erlangen

The construct 1 (K1) was synthesized by IDT. It was cloned into the expression vector pSEC/tag2/Hygro\C\-\OK by Gibson Assembly. Our proteinsequence was under control of the CMV promotor ensuring a high-level constitutive expression. Afterwards, the construct was brought into HEK293T cells with either calcium phosphate transfection or lipofection. The accuracy of the inserted DNA after cloning was confirmed with sequencing. The data is depicted in Fig. 1.

Figure 1: Sequencing data of K1

Fig. 2 shows the western blot of the harvest after transfection into HEK 293T cells. For detection, the His-Tag in the K1 sequence (BBa_K3117005) provides the opportunity to be used as a target for a primary antibody in a western blot. K1 can be seen at expected height (54 kDa). The presence of K1 in the medium proves the function of the Igk leader (BBa_K3117006), which is directing the protein into the secretory pathway.

Figure 2: Western blot of the harvest after transfection into HEK 293T cells with an anti His-Tag antibody

Furthermore the His-Tag (BBa_K3117005) in K1 allows purification of the protein with HisTrap columns. The western blot after this purification is shown in Fig. 3, showing the remaining presence of the protein after this step.

Figure 3: Western blot of the constructs after the purification via HisTrap

User Reviews

UNIQbf167a00eafe7024-partinfo-00000003-QINU UNIQbf167a00eafe7024-partinfo-00000004-QINU