Difference between revisions of "Part:BBa J45119:Experience"
(→User Reviews) |
|||
| (10 intermediate revisions by 3 users not shown) | |||
| Line 4: | Line 4: | ||
===Applications of BBa_J45119=== | ===Applications of BBa_J45119=== | ||
| − | + | ||
===User Reviews=== | ===User Reviews=== | ||
| Line 18: | Line 18: | ||
|}; | |}; | ||
<!-- End of the user review template --> | <!-- End of the user review template --> | ||
| + | |||
| + | |||
| + | {|width='80%' style='border:1px solid gray' | ||
| + | |- | ||
| + | |width='10%'| | ||
| + | <partinfo>BBa_J45119 AddReview 4</partinfo> | ||
| + | <I>UniTN-Trento2013</I> | ||
| + | |width='60%' valign='top'| | ||
| + | This part was resubmitted to the registry in pSB1C3 and characterized under the control of arabinose inducible promoter placed inside our wintergreen production device <partinfo>BBa_K1065102</partinfo>. | ||
| + | |}; | ||
| + | <!-- End of the user review template --> | ||
| + | |||
{|width='80%' style='border:1px solid gray' | {|width='80%' style='border:1px solid gray' | ||
| Line 30: | Line 42: | ||
<!-- DON'T DELETE --><partinfo>BBa_J45119 EndReviews</partinfo> | <!-- DON'T DELETE --><partinfo>BBa_J45119 EndReviews</partinfo> | ||
| − | === | + | ==Characterization== |
| − | The BSMT1 enzyme generator is used in both | + | |
| + | ===Smell test of wintergreen odor generator=== | ||
| + | The wintergreen odor generator (<partinfo>BBa_J45120</partinfo>) includes the BSMT1 enzyme generator (<partinfo>BBa_J45119</partinfo>) under the control of a constitutive promoter (<partinfo>BBa_R0040</partinfo>). | ||
| + | |||
| + | {{:IGEM:MIT/2006/Smell test}} | ||
| + | |||
| + | <br style="clear:both;"/> | ||
| + | |||
| + | ===Gas chromatography analysis of wintergreen odor generator=== | ||
| + | The wintergreen odor generator (<partinfo>BBa_J45120</partinfo>) includes the BSMT1 enzyme generator (<partinfo>BBa_J45119</partinfo>) under the control of a constitutive promoter (<partinfo>BBa_R0040</partinfo>). | ||
| + | |||
| + | {{:IGEM:MIT/2006/Wintergreen odor generator gas chromatograms}} | ||
| + | |||
| + | <br style="clear:both;"/> | ||
| + | |||
| + | ===Use of BSMT1 generator in wintergreen odor generator=== | ||
| + | The BSMT1 enzyme generator (<partinfo>BBa_J45119</partinfo>) is used in both wintergreen odor generators (<partinfo>BBa_J45120</partinfo> and <partinfo>BBa_J45181</partinfo>). | ||
{{:IGEM:MIT/2006/Growth dependent wintergreen odor generator}} | {{:IGEM:MIT/2006/Growth dependent wintergreen odor generator}} | ||
<br style="clear:both;"/> | <br style="clear:both;"/> | ||
Latest revision as of 12:48, 24 September 2013
This experience page is provided so that any user may enter their experience using this part.
Please enter
how you used this part and how it worked out.
Applications of BBa_J45119
User Reviews
UNIQa5afb78c68a0019c-partinfo-00000000-QINU
|
••••
UniTN-Trento2013 |
This part was resubmitted to the registry in pSB1C3 and characterized under the control of arabinose inducible promoter placed inside our wintergreen production device BBa_K1065102. |
|
••••• |
BBa_J45119 was successfully used to produce wintergreen odor under the control of BBa_R0040 in the wintergreen odor generator BBa_J45120. |
UNIQa5afb78c68a0019c-partinfo-00000007-QINU
Characterization
Smell test of wintergreen odor generator
The wintergreen odor generator (BBa_J45120) includes the BSMT1 enzyme generator (BBa_J45119) under the control of a constitutive promoter (BBa_R0040).
Smell tests of cultures of wintergreen and banana odor generators (BBa_J45120 and BBa_J45200, respectively)
At the 2006 iGEM Jamboree, we conducted blind smell tests in which iGEM participants had to distinguish between cell cultures producing wintergreen odor, banana odor and the natural fecal odor of E. coli. Of the 116 respondents, 64% were able to correctly identify the culture producing methyl salicylate through its wintergreen bouquet, 87% were able to correctly identify the culture producing isoamyl acetate through its banana bouquet, and 86% were able to correctly identify the laboratory E. coli strain TOP10 through its stink. The error bars are the specific margin of error at 95% confidence. For the smell tests, we used the odor-free chassis (E. coli strain YYC912) for the wintergreen and banana odor generators.
At the 2006 iGEM Jamboree, we conducted blind smell tests in which iGEM participants had to distinguish between cell cultures producing wintergreen odor, banana odor and the natural fecal odor of E. coli. Of the 116 respondents, 64% were able to correctly identify the culture producing methyl salicylate through its wintergreen bouquet, 87% were able to correctly identify the culture producing isoamyl acetate through its banana bouquet, and 86% were able to correctly identify the laboratory E. coli strain TOP10 through its stink. The error bars are the specific margin of error at 95% confidence. For the smell tests, we used the odor-free chassis (E. coli strain YYC912) for the wintergreen and banana odor generators.
Gas chromatography analysis of wintergreen odor generator
The wintergreen odor generator (BBa_J45120) includes the BSMT1 enzyme generator (BBa_J45119) under the control of a constitutive promoter (BBa_R0040).
Verification of odor production by wintergreen odor generator
We successfully designed, constructed and tested a biosynthetic device for wintergreen odor production from exogenously supplied precursors. To confirm that the wintergreen odor generator produced the correct smell compound, we analyzed cultures with the device supplemented with 2mM salicylic acid by gas chromatography. The wintergreen odor generator (BBa_J45120) produced high levels of methyl salicylate when we add the precursor salicylic acid to the culture medium (A). The cellular chassis alone (E. coli strain TOP10) did not produce methyl salicylate although we added salicylic acid to the culture medium (B). The retention time of the methyl salicylate peak from BBa_J45120 is identical to that of the pure methyl salicylate standard (C). Most E. coli strains produce indole.
We successfully designed, constructed and tested a biosynthetic device for wintergreen odor production from exogenously supplied precursors. To confirm that the wintergreen odor generator produced the correct smell compound, we analyzed cultures with the device supplemented with 2mM salicylic acid by gas chromatography. The wintergreen odor generator (BBa_J45120) produced high levels of methyl salicylate when we add the precursor salicylic acid to the culture medium (A). The cellular chassis alone (E. coli strain TOP10) did not produce methyl salicylate although we added salicylic acid to the culture medium (B). The retention time of the methyl salicylate peak from BBa_J45120 is identical to that of the pure methyl salicylate standard (C). Most E. coli strains produce indole.
Use of BSMT1 generator in wintergreen odor generator
The BSMT1 enzyme generator (BBa_J45119) is used in both wintergreen odor generators (BBa_J45120 and BBa_J45181).
Growth phase dependent wintergreen odor production
To demonstrate growth phase dependent wintergreen odor production, we compared the behavior of constitutive and exponential phase dependent wintergreen odor generators (A and B, respectively). We measured methyl salicylate concentration (relative to the pentachloronitrobenzene internal standard) of cultures of the constitutive and exponential phase wintergreen odor generators at different culture cell densities (OD600nm) (C). The constitutive and exponential phase wintergreen odor generators produced similar levels of methyl salicylate at all cell densities examined. Thus, the exponential phase wintergreen odor generator does not work as intended.
To demonstrate growth phase dependent wintergreen odor production, we compared the behavior of constitutive and exponential phase dependent wintergreen odor generators (A and B, respectively). We measured methyl salicylate concentration (relative to the pentachloronitrobenzene internal standard) of cultures of the constitutive and exponential phase wintergreen odor generators at different culture cell densities (OD600nm) (C). The constitutive and exponential phase wintergreen odor generators produced similar levels of methyl salicylate at all cell densities examined. Thus, the exponential phase wintergreen odor generator does not work as intended.