Difference between revisions of "Part:BBa K4438707"

 
 
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<partinfo>BBa_K4438707 short</partinfo>
 
<partinfo>BBa_K4438707 short</partinfo>
  
P4G13_trigger_4_phi29(BBa_K4438707) is single-stranded DNA having 15 nucleotides. Figure 1B) shows the secondary structure and minimum free energy.
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P4G13_trigger_4_phi29(<partinfo>BBa_K4438707</partinfo>) is single-stranded DNA having 15 nucleotides. Figure 1B) shows the secondary structure and minimum free energy.
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===Usage and Biology===
 
===Usage and Biology===
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The part P4G13_trigger_4_phi29(<partinfo>BBa_K4438707</partinfo>) has complete complementarity to the part P4G13_aptamer (<partinfo>BBa_K4438700</partinfo>) and blocks a part of the binding domain of the aptamer. Figure 1D) Shows the secondary structure of both parts hybridised at 37° Celsius. Progesterone binds with P4G13_aptamer (BBa_K4438700) with high affinity and displaces the P4G13_trigger_4_phi29(<partinfo>BBa_K4438707</partinfo>) [1].
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This part has complete complementarity with part P4G13_Target_4 (<partinfo>BBa_K4438708</partinfo>). Phi 29 DNA extension polymerase extends the template strand and in-vitro transcription of the duplex forms multiple broccoli light-up aptamers.
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Different levels of progesterone can be detected using all these three parts.
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[[File:T--IISER-Tirupati_India--Pg413_4.png]]
  
 
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<partinfo>BBa_K4438707 parameters</partinfo>
 
<partinfo>BBa_K4438707 parameters</partinfo>
 
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===References===
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Contreras Jiménez, G., Eissa, S., Ng, A., Alhadrami, H., Zourob, M., & Siaj, M. (2015). Aptamer-based label-free impedimetric biosensor for detection of progesterone. Analytical chemistry, 87(2), 1075-1082.

Latest revision as of 13:39, 12 October 2022


P4G13_trigger_4_phi29

P4G13_trigger_4_phi29(BBa_K4438707) is single-stranded DNA having 15 nucleotides. Figure 1B) shows the secondary structure and minimum free energy.


Usage and Biology

The part P4G13_trigger_4_phi29(BBa_K4438707) has complete complementarity to the part P4G13_aptamer (BBa_K4438700) and blocks a part of the binding domain of the aptamer. Figure 1D) Shows the secondary structure of both parts hybridised at 37° Celsius. Progesterone binds with P4G13_aptamer (BBa_K4438700) with high affinity and displaces the P4G13_trigger_4_phi29(BBa_K4438707) [1]. This part has complete complementarity with part P4G13_Target_4 (BBa_K4438708). Phi 29 DNA extension polymerase extends the template strand and in-vitro transcription of the duplex forms multiple broccoli light-up aptamers. Different levels of progesterone can be detected using all these three parts.

T--IISER-Tirupati India--Pg413 4.png

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


References

Contreras Jiménez, G., Eissa, S., Ng, A., Alhadrami, H., Zourob, M., & Siaj, M. (2015). Aptamer-based label-free impedimetric biosensor for detection of progesterone. Analytical chemistry, 87(2), 1075-1082.