Difference between revisions of "Part:BBa K4115044"

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This composite part is used to express the tagRFP[https://parts.igem.org/Part:BBa_K4115013 (BBa_K4115013)] by a constitutive promoter J23101[https://parts.igem.org/Part:BBa_J23101 (J23101)], thus we can use red fluorescence as a detection.
 
This composite part is used to express the tagRFP[https://parts.igem.org/Part:BBa_K4115013 (BBa_K4115013)] by a constitutive promoter J23101[https://parts.igem.org/Part:BBa_J23101 (J23101)], thus we can use red fluorescence as a detection.
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===Experimental approach===
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To wrap the e.coli into the alginate gel beads, we first weigh 4g of sodium alginate, add 100ml of hot water, mix well, put in an autoclave, 1.0kg/cm sterilization for 10min, stand at room temperature for 2h, until the bubbles disappear. Then, Take 10 g of E. coli with tagRFP transformed wet cells, suspend them in 10 ml of sterile physiological saline, and prepare a bacterial suspension. After that, we slowly add the above sodium alginate solution and stir to make a suspension. The above suspension was gradually dropped into 1000ml of 0.2mol/LCaCL2 solution with a syringe with a 9-gauge needle and stirred with an electromagnetic stirrer while injecting to form bead-like particles (diameter 3ram). Finally, we soak in CaCL2 solution for 2h, then weigh 4g of sodium alginate and add 100ml of hot water, mix well, put in a high-pressure sterilizer, 1.0kg/cm sterilization for 10min, stand at room temperature for 2h, until gas retention disappears.
  
 
==Proof of function==
 
==Proof of function==
  
We transformed this plasmid into E. coli and encapsulated the E. coli into alginate gel beads. It was then induced to express tagRFP. We photograph the cross section of the gel beads under a confocal microscope and get Figure 1.
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We transformed this plasmid into E. coli and encapsulated the E. coli into alginate gel beads. It was then induced to express tagRFP. We photograph the cross-section of the gel beads under a confocal microscope and get Figure 1.
  
 
[[File:TagRFP in gel beads.jpg|700px|]]
 
[[File:TagRFP in gel beads.jpg|700px|]]

Revision as of 07:14, 3 October 2022


J23101-B0034-tagRFP-B0015

CMV:Ha-NLS-dCas9-Linker-VP16-NLS:BGH
Function gene reporter
Use in E.coli
RFC standard RFC 10, RFC 10 compatible
Backbone pBBR1
Submitted by (ShanghaiTech_China)

This composite part is used to express the tagRFP(BBa_K4115013) by a constitutive promoter J23101(J23101), thus we can use red fluorescence as a detection.


Experimental approach

To wrap the e.coli into the alginate gel beads, we first weigh 4g of sodium alginate, add 100ml of hot water, mix well, put in an autoclave, 1.0kg/cm sterilization for 10min, stand at room temperature for 2h, until the bubbles disappear. Then, Take 10 g of E. coli with tagRFP transformed wet cells, suspend them in 10 ml of sterile physiological saline, and prepare a bacterial suspension. After that, we slowly add the above sodium alginate solution and stir to make a suspension. The above suspension was gradually dropped into 1000ml of 0.2mol/LCaCL2 solution with a syringe with a 9-gauge needle and stirred with an electromagnetic stirrer while injecting to form bead-like particles (diameter 3ram). Finally, we soak in CaCL2 solution for 2h, then weigh 4g of sodium alginate and add 100ml of hot water, mix well, put in a high-pressure sterilizer, 1.0kg/cm sterilization for 10min, stand at room temperature for 2h, until gas retention disappears.

Proof of function

We transformed this plasmid into E. coli and encapsulated the E. coli into alginate gel beads. It was then induced to express tagRFP. We photograph the cross-section of the gel beads under a confocal microscope and get Figure 1.

TagRFP in gel beads.jpg

Figure 1: Confocal image of cross-section of gel beads with red fluorescent protein E.coli.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 695
    Illegal SapI.rc site found at 77