Difference between revisions of "Talk:Protein domains"
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*[http://openwetware.org/wiki/BBRFC14 Protein domains parts]
 
*[http://openwetware.org/wiki/BBRFC14 Protein domains parts]
 
*[http://openwetware.org/wiki/SynBERC:MIT/Calendar/2007-8-8 Wishlist of wanted parts]
 
*[http://openwetware.org/wiki/SynBERC:MIT/Calendar/2007-8-8 Wishlist of wanted parts]
 +
*[http://ca.expasy.org/tools/peptidecutter/peptidecutter_enzymes.html ExPASy PeptideCutter]: The cleavage specificities of selected enzymes and chemicals
 +
 +
==Parts that have been designed==
 
*His tag: [[Part:BBa_T2000]] | [[Part:BBa_T2001]] | [[Part:BBa_T2002]] (6xHis)
 
*His tag: [[Part:BBa_T2000]] | [[Part:BBa_T2001]] | [[Part:BBa_T2002]] (6xHis)
 
*FLAG tag: [[Part:BBa_T2003]] | [[Part:BBa_T2004]] | [[Part:BBa_T2005]] (DYKDDDDK)
 
*FLAG tag: [[Part:BBa_T2003]] | [[Part:BBa_T2004]] | [[Part:BBa_T2005]] (DYKDDDDK)
 
*C-Myc: [[Part:BBa_T2006]] | [[Part:BBa_T2007]] | [[Part:BBa_T2008]] (EQKLISEEDL)
 
*C-Myc: [[Part:BBa_T2006]] | [[Part:BBa_T2007]] | [[Part:BBa_T2008]] (EQKLISEEDL)
 
*HA tag: [[Part:BBa_T2009]] | [[Part:BBa_T2010]] | [[Part:BBa_T2011]] (YPYDVPDYA)
 
*HA tag: [[Part:BBa_T2009]] | [[Part:BBa_T2010]] | [[Part:BBa_T2011]] (YPYDVPDYA)

Revision as of 18:08, 13 August 2009

Categories

  • //proteintags/affinity
  • //proteintags/cleavage
  • //proteintags/degradation
  • //proteintags/localization

Tables

  • protein_affinity_tags
    • //proteintags/affinity
  • protein_cleavage_sites
    • //proteintags/cleavage
  • protein_degradation_tags
    • //proteintags/degradation
  • protein_localization_sequences
    • //proteintags/localization

Columns for general protein tag tables

  • Available/Working
  • Part number (left aligned)
  • Description (left aligned)
  • AA sequence (most of these sequences are very short, courier or other fixed width font, left aligned) <- auto-generated by the computer
  • Length (centered) <- auto-generated by the computer

Columns for protein cleavage site tables

  • Available/Working
  • Part number (left aligned)
  • Description (left aligned)
  • Protease (centered, ideally should include links to coding sequences of the protease entered in the Registry)
  • AA sequence (most of these parts are very short, courier or other fixed width font, left aligned)
  • Length (centered)

Columns for protein degradation tag tables

  • Available/Working
  • Part number (left aligned)
  • Description (left aligned)
  • Chassis (center)
  • Half-life (centered)
  • AA sequence (most of these parts are very short, courier or other fixed width font, left aligned)
  • Length (centered)

Columns for protein affinity tag tables

  • Available/Working
  • Part number (left aligned)
  • Description (left aligned)
  • Column/resin (centered)
  • AA sequence (most of these parts are very short, courier or other fixed width font, left aligned)
  • Length (centered)

Parts to make

  • [http://openwetware.org/wiki/Protein_purification_tags Protein purification tags]
  • [http://openwetware.org/wiki/BBRFC14 Protein domains parts]
  • [http://openwetware.org/wiki/SynBERC:MIT/Calendar/2007-8-8 Wishlist of wanted parts]
  • [http://ca.expasy.org/tools/peptidecutter/peptidecutter_enzymes.html ExPASy PeptideCutter]: The cleavage specificities of selected enzymes and chemicals

Parts that have been designed