Difference between revisions of "Part:BBa K3779009"
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<partinfo>BBa_K3779009 short</partinfo> | <partinfo>BBa_K3779009 short</partinfo> | ||
+ | ① Codon optimization | ||
+ | |||
+ | The original target gene BBa_K3779022 was codon optimized according to pichia pastoris preference, and the optimized codon SS-bgly (BBa_K3779001) was used for plasmid construction to improve the activity of our enzyme. | ||
+ | |||
+ | ②the signal peptide | ||
+ | |||
+ | We added the signal peptide α-factor (BBa_K3779002) to our plasmid, which contributed to the extracellular expression of our target protein in pichia pastoris. | ||
+ | |||
+ | ③ AOX1 promoter | ||
+ | |||
+ | We used methanol-induced promoters and designed 5 'and 3' primers BBa_K3779000 and BBa_K3779003. | ||
+ | |||
+ | ④ Integration of foreign genes | ||
+ | |||
+ | Linearized plasmids were introduced into p. Pastoris genome for homologous integration by electrotransformation. This method is simple and efficient in practice. | ||
+ | The recombinant expression strain of pichia pastoris β -glycosidase was constructed, as shown in figure. | ||
+ | |||
+ | https://2021.igem.org/wiki/images/2/29/T--NWU-CHINA-B--pPIC9K-SS-bgly.png | ||
+ | |||
+ | Results As shown in the figure, there was a target band of about 2000 bp in line with the theoretical size, while the blank control GS115-pPIC9K only had a band of 500 bp, proving that the recombinant strain was successfully constructed. | ||
+ | |||
+ | https://2021.igem.org/wiki/images/2/2a/T--NWU-CHINA-B--GS115-pPIC9K-SS-bgly_strains.png | ||
+ | https://2021.igem.org/wiki/images/7/75/T--NWU-CHINA-B--PCR_validation_of_inverters.png | ||
+ | |||
+ | The GS115-pPIC9K-SS-bgly 6# transformants were activated and fermented on YPD plate.The fermentation process curve and the standard curve between the standard protein concentration and the absorbance value are shown below. | ||
+ | |||
+ | https://2021.igem.org/wiki/images/d/db/T--NWU-CHINA-B--_t9K_12_.png | ||
+ | https://2021.igem.org/wiki/images/6/66/T--NWU-CHINA-B--_t9K_13_.png | ||
+ | sds-page analysis | ||
+ | |||
+ | After methanol induction for 120 h, 10 L of supernatant was taken for SDS-PAGE electrophoresis. A clear band was observed near the target molecular weight of 57 kDa, indicating that SS-bgly gene was successfully expressed in P. Pastoris. | ||
+ | |||
+ | https://2021.igem.org/wiki/images/7/70/T--NWU-CHINA-B--SDS-PAGE_electrophoresis_figure%284%29.png | ||
By introducing the synthetic gene into the plasmid, we can obtain the desired strain | By introducing the synthetic gene into the plasmid, we can obtain the desired strain |
Latest revision as of 06:46, 20 October 2021
pPIC9K-SS-bgly
① Codon optimization
The original target gene BBa_K3779022 was codon optimized according to pichia pastoris preference, and the optimized codon SS-bgly (BBa_K3779001) was used for plasmid construction to improve the activity of our enzyme.
②the signal peptide
We added the signal peptide α-factor (BBa_K3779002) to our plasmid, which contributed to the extracellular expression of our target protein in pichia pastoris.
③ AOX1 promoter
We used methanol-induced promoters and designed 5 'and 3' primers BBa_K3779000 and BBa_K3779003.
④ Integration of foreign genes
Linearized plasmids were introduced into p. Pastoris genome for homologous integration by electrotransformation. This method is simple and efficient in practice. The recombinant expression strain of pichia pastoris β -glycosidase was constructed, as shown in figure.
Results As shown in the figure, there was a target band of about 2000 bp in line with the theoretical size, while the blank control GS115-pPIC9K only had a band of 500 bp, proving that the recombinant strain was successfully constructed.
The GS115-pPIC9K-SS-bgly 6# transformants were activated and fermented on YPD plate.The fermentation process curve and the standard curve between the standard protein concentration and the absorbance value are shown below.
sds-page analysis
After methanol induction for 120 h, 10 L of supernatant was taken for SDS-PAGE electrophoresis. A clear band was observed near the target molecular weight of 57 kDa, indicating that SS-bgly gene was successfully expressed in P. Pastoris.
By introducing the synthetic gene into the plasmid, we can obtain the desired strain
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal EcoRI site found at 7794
Illegal EcoRI site found at 13316
Illegal EcoRI site found at 18563
Illegal EcoRI site found at 27993
Illegal XbaI site found at 14126
Illegal XbaI site found at 19373
Illegal XbaI site found at 28803
Illegal PstI site found at 1920
Illegal PstI site found at 3161
Illegal PstI site found at 5716
Illegal PstI site found at 7543
Illegal PstI site found at 8683
Illegal PstI site found at 11238
Illegal PstI site found at 13065 - 12INCOMPATIBLE WITH RFC[12]Illegal EcoRI site found at 7794
Illegal EcoRI site found at 13316
Illegal EcoRI site found at 18563
Illegal EcoRI site found at 27993
Illegal NheI site found at 8365
Illegal NheI site found at 13887
Illegal NheI site found at 14834
Illegal NheI site found at 19134
Illegal NheI site found at 20081
Illegal NheI site found at 28564
Illegal NheI site found at 29511
Illegal PstI site found at 1920
Illegal PstI site found at 3161
Illegal PstI site found at 5716
Illegal PstI site found at 7543
Illegal PstI site found at 8683
Illegal PstI site found at 11238
Illegal PstI site found at 13065
Illegal NotI site found at 7806
Illegal NotI site found at 13328
Illegal NotI site found at 18575
Illegal NotI site found at 28005 - 21INCOMPATIBLE WITH RFC[21]Illegal EcoRI site found at 7794
Illegal EcoRI site found at 13316
Illegal EcoRI site found at 18563
Illegal EcoRI site found at 27993
Illegal BglII site found at 4170
Illegal BglII site found at 6573
Illegal BglII site found at 9692
Illegal BglII site found at 12095
Illegal BglII site found at 17342
Illegal BglII site found at 24215
Illegal BglII site found at 26772
Illegal BamHI site found at 7510
Illegal BamHI site found at 13032
Illegal BamHI site found at 18279
Illegal BamHI site found at 27709
Illegal XhoI site found at 1749
Illegal XhoI site found at 3005
Illegal XhoI site found at 7764
Illegal XhoI site found at 13286
Illegal XhoI site found at 18533
Illegal XhoI site found at 23050
Illegal XhoI site found at 27963 - 23INCOMPATIBLE WITH RFC[23]Illegal EcoRI site found at 7794
Illegal EcoRI site found at 13316
Illegal EcoRI site found at 18563
Illegal EcoRI site found at 27993
Illegal XbaI site found at 14126
Illegal XbaI site found at 19373
Illegal XbaI site found at 28803
Illegal PstI site found at 1920
Illegal PstI site found at 3161
Illegal PstI site found at 5716
Illegal PstI site found at 7543
Illegal PstI site found at 8683
Illegal PstI site found at 11238
Illegal PstI site found at 13065 - 25INCOMPATIBLE WITH RFC[25]Illegal EcoRI site found at 7794
Illegal EcoRI site found at 13316
Illegal EcoRI site found at 18563
Illegal EcoRI site found at 27993
Illegal XbaI site found at 14126
Illegal XbaI site found at 19373
Illegal XbaI site found at 28803
Illegal PstI site found at 1920
Illegal PstI site found at 3161
Illegal PstI site found at 5716
Illegal PstI site found at 7543
Illegal PstI site found at 8683
Illegal PstI site found at 11238
Illegal PstI site found at 13065
Illegal AgeI site found at 7872
Illegal AgeI site found at 13394
Illegal AgeI site found at 18641
Illegal AgeI site found at 28071 - 1000COMPATIBLE WITH RFC[1000]