Difference between revisions of "Registry/Software Changes"
 
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* Support for alternate assembly methods and the resulting variation in "scars" in the sequence.
 
* Support for alternate assembly methods and the resulting variation in "scars" in the sequence.
 
** Support for multiple sequences for a part.
 
** Support for multiple sequences for a part.
−
* Machine readable formats for Registry contents. (e.g. XML, JASON, rdf)
+
* Machine readable formats for Registry contents. (e.g. XML, JSON, csv, rdf)
 
* Machine readable formats for part submissions.  (e.g. XML, or Excel Spreadsheet)
 
* Machine readable formats for part submissions.  (e.g. XML, or Excel Spreadsheet)
 
* Provide private sandbox space for laboratories so they can keep their work hidden until it is
 
* Provide private sandbox space for laboratories so they can keep their work hidden until it is
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* New text search engine.
 
* New text search engine.
 
* Improve part quality:
 
* Improve part quality:
−
** Part type specific database information (like the new protein coding region information)
+
** Part-type-specific database information (like the new protein coding region information)
−
** Implement the part promotion and rating system
+
** Implementfion of the part promotion and rating system
−
** Get the parts sequenced and checked for accuracy (some software required)
+
** Part sequencing and checking for accuracy (some software required)
  
 
* New features
 
* New features
 
** Tools to help preparing a part for synthesis
 
** Tools to help preparing a part for synthesis
 
** GENBANK format sequence and feature input and output
 
** GENBANK format sequence and feature input and output
−
** Automatic feature finding like in APE
+
** Automatic feature finding as in APE
 +
 
 +
* New documentation under development
 +
** [[Registry Software Documentation]]
  
 
If you have a new user suggestion, please add it to the page [[Software_Changes/Suggestions|here]].
 
If you have a new user suggestion, please add it to the page [[Software_Changes/Suggestions|here]].

Latest revision as of 16:35, 10 March 2008

We are now working on the 4th generation of Registry software. We are also starting a Registry Steering Committee. Stay tuned.

Here is a disorganized list of software tasks.

  • User and group management system More...
  • Support for alternate assembly methods and the resulting variation in "scars" in the sequence.
    • Support for multiple sequences for a part.
  • Machine readable formats for Registry contents. (e.g. XML, JSON, csv, rdf)
  • Machine readable formats for part submissions. (e.g. XML, or Excel Spreadsheet)
  • Provide private sandbox space for laboratories so they can keep their work hidden until it is

published.

  • New interfaces to the DNA sequencing system.
  • New text search engine.
  • Improve part quality:
    • Part-type-specific database information (like the new protein coding region information)
    • Implementfion of the part promotion and rating system
    • Part sequencing and checking for accuracy (some software required)
  • New features
    • Tools to help preparing a part for synthesis
    • GENBANK format sequence and feature input and output
    • Automatic feature finding as in APE

If you have a new user suggestion, please add it to the page here.