Difference between revisions of "Part:BBa K2374003"
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__NOTOC__ | __NOTOC__ | ||
<partinfo>BBa_K2374003 short</partinfo> | <partinfo>BBa_K2374003 short</partinfo> | ||
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{| style="color:black" cellpadding="6" cellspacing="1" border="2" align="right" | {| style="color:black" cellpadding="6" cellspacing="1" border="2" align="right" | ||
− | ! colspan="2" style="background:#FFBF00;"| | + | ! colspan="2" style="background:#FFBF00;"|TH |
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|'''Use in''' | |'''Use in''' | ||
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|[http://2017.igem.org/Team:Tongji_China Tongji_China 2017] | |[http://2017.igem.org/Team:Tongji_China Tongji_China 2017] | ||
|} | |} | ||
+ | '''ple''' (Tyrosine 3-monooxygenase, TH) | ||
+ | '''ple''' (TH) is a rate-limiting enzyme in the dopamine’s synthesis, and it plays an important role in the physiology of adrenergic neurons.<br> | ||
+ | '''Catalytic activity''': | ||
+ | L-tyrosine + tetrahydrobiopterin + O2 = L-dopa + 4a-hydroxytetrahydrobiopterin.<br> | ||
+ | This subpathway is part of the pathway dopamine biosynthesis, which is itself part of catecholamine biosynthesis.<br> | ||
− | |||
− | |||
− | |||
− | |||
− | |||
+ | [[File:2017tongji_registry_image_dopa.png|center|600px|dopa]] | ||
+ | <br> | ||
− | + | ===Design Notes=== | |
+ | '''ple''' has three alternatively spliced transcript variants which encode iosforms of TH. We choose isoform B to construct our plasmid. | ||
+ | [[File:2017tongji_image_registry_TH_base.png|center|300px|标题]] | ||
+ | According to our experiment results to judge, the '''ple''' coding sequence is hard to clone from ''Drosophila'' 's cDNA library because of its multi-segment repeats. | ||
+ | So we recommend that you obtain from the constructed plasmid, or synthesize it directly. | ||
+ | We ordered a synthetic '''ple''' from GENEWIZ®, and cloned it into pUAST vector with two restriction sites: EcoRI and XbaI. | ||
+ | We connected TH promoter to GAL4( BBa_K2374004 [https://parts.igem.org/Part:BBa_K2374004] )and GAL80ts( BBa_K2374002 [https://parts.igem.org/Part:BBa_K2374002] )respectively, and cloned them into pUAST vector which had been removed the UAS sequence( BBa_K2374008 [https://parts.igem.org/Part:BBa_K2374008] ), then to microinject them into ''Drosophila'' 's eggs. Also we did microinjection with UAS-TH (BBa_K2374007 [https://parts.igem.org/Part:BBa_K2374007]). After hybridization screening, we got stable modified fruit fly strains. Finally, we did RT-PCR, qPCR and behavioral experiments to test our system. Here shows some results[http://2017.igem.org/Team:Tongji_China/Experiments]. | ||
+ | [[File:2017tongji_image_registry_ple4.png|center|200px|pleP-GAL4]] <br> <br> | ||
+ | [[File:2017tongji_image_registry_ple80.png|center|200px|pleP-GAL80ts]] <br><br> | ||
+ | [[File:2017tongji_image_registry_uTH.png|center|200px|pleP-GAL80ts]] <br><br> | ||
+ | |||
+ | We cloned TH into shipping backbone pSB1C3 with In-Fusion. Here shows the restriction endonuclease digestion image of pSB1C3-TH. | ||
+ | |||
+ | [[File:2017tongji image registry UASTHtest.png|center|400px|标题]] | ||
+ | |||
+ | site direct mutagenesis for submission::<br> | ||
+ | 1. EcoR I (130) GAATTC->AAATTC <br> | ||
+ | 2. Pst I (782) CTGCAG->CTGCTG | ||
+ | |||
+ | ===Test Results=== | ||
+ | 1. Use Real-time PCR to detect whether the expression of TH is increased at 29°C. It shows that the relative expression of TH in modified fruit flies increased significantly.<br> | ||
+ | [[File:2017tongji_image_registry_qPCR.png|center|300px]] | ||
+ | 2. Detect male-male courtship when raising the temperature. Mating index refers to the relative time that the fruit fly use for mating.<br> | ||
+ | It shows that he mating index of the treated group rises significantly in at 29°C. [time=5minutes, n=5, P<0.01] | ||
+ | [[File:2017tongji_image_registry_behavior1.png|center|350px]] | ||
+ | |||
+ | [http://2017.igem.org/Team:Tongji_China/Experiments More details] | ||
+ | ===Source=== | ||
+ | |||
+ | GeneCards®: The Human Gene Database [http://www.genecards.org/cgi-bin/carddisp.pl?gene=TH] | ||
+ | |||
+ | NCBI [https://www.ncbi.nlm.nih.gov/gene/?term=38746] | ||
+ | |||
+ | FlyBase [http://flybase.org/reports/FBgn0005626.html] | ||
+ | |||
+ | ===References=== | ||
+ | |||
+ | Janice A. Fischer, et al. GAL4 activates transcription in ''Drosophila''. ''Nature'' 332, 853 - 856 (1988) | ||
<!-- Add more about the biology of this part here | <!-- Add more about the biology of this part here | ||
===Usage and Biology=== | ===Usage and Biology=== | ||
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<!-- --> | <!-- --> | ||
<span class='h3bb'>Sequence and Features</span> | <span class='h3bb'>Sequence and Features</span> | ||
<partinfo>BBa_K2374003 SequenceAndFeatures</partinfo> | <partinfo>BBa_K2374003 SequenceAndFeatures</partinfo> | ||
− | + | <!-- Uncomment this to enable Functional Parameter display | |
− | + | ||
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===Functional Parameters=== | ===Functional Parameters=== | ||
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<partinfo>BBa_K2374003 parameters</partinfo> | <partinfo>BBa_K2374003 parameters</partinfo> | ||
<!-- --> | <!-- --> |
Latest revision as of 03:08, 2 November 2017
ple (Tyrosine 3-monooxygenase, TH) -> (fruit fly)
TH | |
---|---|
Use in | D.melanogaster |
RFC standard | RFC 10 compatible |
Backbone | pSB1C3 |
Submitted by | [http://2017.igem.org/Team:Tongji_China Tongji_China 2017] |
ple (Tyrosine 3-monooxygenase, TH)
ple (TH) is a rate-limiting enzyme in the dopamine’s synthesis, and it plays an important role in the physiology of adrenergic neurons.
Catalytic activity:
L-tyrosine + tetrahydrobiopterin + O2 = L-dopa + 4a-hydroxytetrahydrobiopterin.
This subpathway is part of the pathway dopamine biosynthesis, which is itself part of catecholamine biosynthesis.
Design Notes
ple has three alternatively spliced transcript variants which encode iosforms of TH. We choose isoform B to construct our plasmid.
According to our experiment results to judge, the ple coding sequence is hard to clone from Drosophila 's cDNA library because of its multi-segment repeats. So we recommend that you obtain from the constructed plasmid, or synthesize it directly.
We ordered a synthetic ple from GENEWIZ®, and cloned it into pUAST vector with two restriction sites: EcoRI and XbaI. We connected TH promoter to GAL4( BBa_K2374004 [1] )and GAL80ts( BBa_K2374002 [2] )respectively, and cloned them into pUAST vector which had been removed the UAS sequence( BBa_K2374008 [3] ), then to microinject them into Drosophila 's eggs. Also we did microinjection with UAS-TH (BBa_K2374007 [4]). After hybridization screening, we got stable modified fruit fly strains. Finally, we did RT-PCR, qPCR and behavioral experiments to test our system. Here shows some results[http://2017.igem.org/Team:Tongji_China/Experiments].
We cloned TH into shipping backbone pSB1C3 with In-Fusion. Here shows the restriction endonuclease digestion image of pSB1C3-TH.
site direct mutagenesis for submission::
1. EcoR I (130) GAATTC->AAATTC
2. Pst I (782) CTGCAG->CTGCTG
Test Results
1. Use Real-time PCR to detect whether the expression of TH is increased at 29°C. It shows that the relative expression of TH in modified fruit flies increased significantly.
2. Detect male-male courtship when raising the temperature. Mating index refers to the relative time that the fruit fly use for mating.
It shows that he mating index of the treated group rises significantly in at 29°C. [time=5minutes, n=5, P<0.01]
[http://2017.igem.org/Team:Tongji_China/Experiments More details]
Source
GeneCards®: The Human Gene Database [http://www.genecards.org/cgi-bin/carddisp.pl?gene=TH]
NCBI [5]
FlyBase [http://flybase.org/reports/FBgn0005626.html]
References
Janice A. Fischer, et al. GAL4 activates transcription in Drosophila. Nature 332, 853 - 856 (1988)
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 1157
Illegal XhoI site found at 289 - 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000INCOMPATIBLE WITH RFC[1000]Illegal BsaI site found at 535
Illegal BsaI site found at 1501
Illegal BsaI.rc site found at 253
Illegal BsaI.rc site found at 1019
Illegal BsaI.rc site found at 1168