Difference between revisions of "Part:BBa K1065310:Design"

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===Design Notes===
 
===Design Notes===
 
We designed this part by inserting an Anderson promoter (<partinfo>BBa_J23100</partinfo>) upstream of <partinfo>BBa_K592016</partinfo> (YF1 and FixJ) creating a new part: <partinfo>BBa_K1065306</partinfo>. Then we combined this part with <partinfo>BBa_K592020</partinfo> (that consists of the rest of the circuit, the inverter cassette and the reporter amilCP).<BR>
 
We designed this part by inserting an Anderson promoter (<partinfo>BBa_J23100</partinfo>) upstream of <partinfo>BBa_K592016</partinfo> (YF1 and FixJ) creating a new part: <partinfo>BBa_K1065306</partinfo>. Then we combined this part with <partinfo>BBa_K592020</partinfo> (that consists of the rest of the circuit, the inverter cassette and the reporter amilCP).<BR>
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Note that a terminator is missing after pFixK2. We suggest to instert at least one Terminator after the inducible promoter in order to have a better defined switch from the ON state to the OFF state.
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Note that a terminator is missing before pFixK2. We suggest to instert at least one Terminator before the promoter in order to have a better defined switch from the ON state to the OFF state.
  
 
===Source===
 
===Source===
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===References===
 
===References===
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<html>
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1)  Moglich A, Ayers RA and Moffat K. (2009) Design and Signaling Mechanism of Light-Regulated Histidine Kinases. J. Mol. Bio. 385, 5, 1433-1444.<BR>2) Ohlendorf, R., Vidavski, R.R., Eldar, A., Moffat, K. & Möglich, A.(2012). From Dusk till Dawn: One-Plasmid Systems for Light-Regulated Gene Expression. J. Mol. Biol., 416: 534: 542<BR>
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<ol>
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3)  A synthetic oscillatory network of transcriptional regulators , Elowitz M.B. , Leibler S., Nature(403),335-38: 2000<br>
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<li> <a id= "ref 1"></a> Moglich A, Ayers RA and Moffat K. (2009) Design and Signaling Mechanism of Light-Regulated Histidine Kinases. J. Mol. Bio. 385, 5, 1433-1444.</li>
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4)  Octamerization of CI repressor is needed for effective repression of PRM and efficient switching from lysogeny. Ian B. Dodd,1 Alison J. Perkins, Daniel Tsemitsidis, and J. Barry Egan , Genes and Development (Vol 15, No. 22) 3013-3022: 2001<br>
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<li><a id= "ref 2"></a> Ohlendorf, R., Vidavski, R.R., Eldar, A., Moffat, K. & Möglich, A.(2012). From Dusk till Dawn: One-Plasmid Systems for Light-Regulated Gene Expression. J. Mol. Biol., 416: 534: 542</li>
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5)  Alieva, N. O., et al. 2008. Diversity and evolution of coral fluorescent proteins. PLoS One 3:e2680.
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<li><a id= "ref 3"></a> Octamerization of CI repressor is needed for effective repression of PRM and efficient switching from lysogeny. Ian B. Dodd,1 Alison J. Perkins, Daniel Tsemitsidis, and J. Barry Egan , Genes and Development (Vol 15, No. 22) 3013-3022: 2001</li>
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<li><a id= "ref 4"></a> Alieva, N. O., et al. 2008. Diversity and evolution of coral fluorescent proteins. PLoS One 3:e2680.</li>
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</ol>
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</html>

Latest revision as of 22:20, 4 October 2013

Blue light circuit with inverter for the production of amilCP


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 7
    Illegal NheI site found at 30
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 605
    Illegal NgoMIV site found at 677
    Illegal NgoMIV site found at 767
    Illegal NgoMIV site found at 785
    Illegal NgoMIV site found at 1297
    Illegal NgoMIV site found at 1590
    Illegal NgoMIV site found at 1684
    Illegal AgeI site found at 319
    Illegal AgeI site found at 1465
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 1354
    Illegal BsaI.rc site found at 218


Design Notes

We designed this part by inserting an Anderson promoter (BBa_J23100) upstream of BBa_K592016 (YF1 and FixJ) creating a new part: BBa_K1065306. Then we combined this part with BBa_K592020 (that consists of the rest of the circuit, the inverter cassette and the reporter amilCP).
Note that a terminator is missing before pFixK2. We suggest to instert at least one Terminator before the promoter in order to have a better defined switch from the ON state to the OFF state.

Source

This part was obtained using three parts:
BBa_J23100
BBa_K592016
BBa_K592020

References

  1. Moglich A, Ayers RA and Moffat K. (2009) Design and Signaling Mechanism of Light-Regulated Histidine Kinases. J. Mol. Bio. 385, 5, 1433-1444.
  2. Ohlendorf, R., Vidavski, R.R., Eldar, A., Moffat, K. & Möglich, A.(2012). From Dusk till Dawn: One-Plasmid Systems for Light-Regulated Gene Expression. J. Mol. Biol., 416: 534: 542
  3. Octamerization of CI repressor is needed for effective repression of PRM and efficient switching from lysogeny. Ian B. Dodd,1 Alison J. Perkins, Daniel Tsemitsidis, and J. Barry Egan , Genes and Development (Vol 15, No. 22) 3013-3022: 2001
  4. Alieva, N. O., et al. 2008. Diversity and evolution of coral fluorescent proteins. PLoS One 3:e2680.