All public logs

Combined display of all available logs of parts.igem.org. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

• 06:43, 13 October 2020 TalayKD (Talk | contribs) uploaded File:T--ICS BKK--Phage A25 docked with receptor on S. pyogenes.png (We decided to dock Phage A25, a bacteriophage that naturally binds to S. pyogenes, to S. pyogenes. The binding affinity calculated by Autodock Vina was -7.54 kcal/mol.)
• 06:42, 13 October 2020 TalayKD (Talk | contribs) uploaded File:T--ICS BKK--Phage P2 Mutant 327 docked with receptor on L. lactis.png (This is the docking of Phage P2 Mutant #327 with receptor on L. lactis, which had a binding affinity of -10.01 kcal/mol.)
• 06:40, 13 October 2020 TalayKD (Talk | contribs) uploaded File:T--ICS BKK--Docking of P2 and L. lactis (macromolecule).png (Using Autodock Vina, we then docked this modelled macromolecule with the Phage P2’s PDB structure, which can be found in RCSB Protein Data Bank. The binding affinity given by Autodock Vina was -11.38 kcal/mol. From our experience, Autodock Vina’s b...)
• 06:38, 13 October 2020 TalayKD (Talk | contribs) uploaded File:T--ICS BKK--Phage receptor macromolecule on L. lactis.png (This Lactococcus Lactis carbohydrate receptor is the receptor for its natural phage P2. The Lactococcus Lactis bacteria plays a large role in dairy fermentations, although they are constantly attacked by bacteriophages. Thus, it becomes important to st...)
• 06:36, 13 October 2020 TalayKD (Talk | contribs) uploaded File:T--ICS BKK--Mutated Phage P2 327 on Peptidoglycan.png (In an attempt to decrease the binding affinity value between Phage P2 and S. pyogenes, we used MODELLER to model 450 different versions of Phage P2. MODELLER is used to predict a protein’s three-dimensional structures when the program is provided wit...)
• 06:34, 13 October 2020 TalayKD (Talk | contribs) uploaded File:T--ICS BKK--P2 on Peptidoglycan.png (This image shows the docking of Phage P2 on Peptidoglycan. We used Autodock Vina to dock the PDB format of Phage P2 with the receptor of S. pyogenes, which is peptidoglycan, in which its three-dimensional structure can be found on PubChem. We found the...)
• 05:52, 13 October 2020 TalayKD (Talk | contribs) uploaded File:Phage A25 docked with receptor on S. pyogenes.png (We decided to dock Phage A25, a bacteriophage that naturally binds to S. pyogenes, to S. pyogenes. The binding affinity calculated by Autodock Vina was -7.54 kcal/mol.)
• 05:43, 13 October 2020 TalayKD (Talk | contribs) uploaded File:Phage P2 Mutant 327 docked with receptor on L. lactis.png (This is the docking of Phage P2 Mutant #327 with receptor on L. lactis, which had a binding affinity of -10.01 kcal/mol.)
• 05:33, 13 October 2020 TalayKD (Talk | contribs) uploaded File:Docking of P2 and L. lactis (macromolecule).png (Using Autodock Vina, we then docked this modelled macromolecule with the Phage P2’s PDB structure, which can be found in RCSB Protein Data Bank. The binding affinity given by Autodock Vina was -11.38 kcal/mol. From our experience, Autodock Vina’s b...)
• 05:30, 13 October 2020 TalayKD (Talk | contribs) uploaded File:Phage receptor macromolecule on L. lactis.png (This Lactococcus Lactis carbohydrate receptor is the receptor for its natural phage P2. The Lactococcus Lactis bacteria plays a large role in dairy fermentations, although they are constantly attacked by bacteriophages. Thus, it becomes important to st...)
• 04:56, 13 October 2020 TalayKD (Talk | contribs) uploaded File:Mutated Phage 327 on Peptidoglycan.png (In an attempt to decrease the binding affinity value between Phage P2 and S. pyogenes, we used MODELLER to model 450 different versions of Phage P2. MODELLER is used to predict a protein’s three-dimensional structures when the program is provided wit...)
• 04:52, 13 October 2020 TalayKD (Talk | contribs) uploaded a new version of File:P2 on Peptidoglycan.png
• 04:45, 13 October 2020 TalayKD (Talk | contribs) uploaded File:P2 on Peptidoglycan.png (This image shows the docking of Phage P2 on Peptidoglycan. We used Autodock Vina to dock the PDB format of Phage P2 with the receptor of S. pyogenes, which is peptidoglycan, in which its three-dimensional structure can be found on PubChem. We found the...)