Coding

Part:BBa_K864204:Design

Designed by: Erik Lundin   Group: iGEM12_Uppsala_University   (2012-09-25)


OmpF


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 99
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 232
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

Illegal PstI restriction site removed by silent mutations T>A at position 66 and A>T at position 69 using primers listed below (annealing sequences are underlined)

ompF_rsr_F CTGAAATCTATAACAAAGATGGCAA

ompF_rsr_R CTGCGTTTGCAGTACCTGCT


Source

Amplified from MG1655 (accession NC_000913) chromosome using primers listed below (annealing sequences are underlined)

ompF_BB_F TTCGAATTCGCGGCCGCTTCTAGATGATGAAGCGCAATATTC

ompF_BB_R CGGCCGCTACTAGTATTATTAGAACTGGTAAACGATACC

References