Reporter

Part:BBa_K4752007

Designed by: Lang Zeng, Chenyu Li, Huafeng Zheng   Group: iGEM23_HNU-China   (2023-10-06)


NCED3-RUBY reporter

Discription

The NCED3 promoter is a specialized regulatory region in the plant genome that becomes active under drought conditions. When a plant experiences drought stress, the NCED3 promoter becomes activated, initiating a cascade of molecular events. This activation, in turn, triggers the expression of the RUBY reporter system.

RUBY serves as a reporter system, generating a visible and distinctive red coloration in the plant's leaves when activated by the NCED3 promoter . The change in leaf coloration is a clear visual indicator, making it easy to identify plants undergoing drought stress. This feature is valuable for monitoring and studying the plant's response to drought conditions, aiding researchers and farmers in assessing and managing plant health.


Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal EcoRI site found at 1378
    Illegal XbaI site found at 25
    Illegal PstI site found at 1982
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal EcoRI site found at 1378
    Illegal PstI site found at 1982
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal EcoRI site found at 1378
    Illegal BglII site found at 509
    Illegal BglII site found at 2014
    Illegal BglII site found at 5737
    Illegal BamHI site found at 1794
    Illegal XhoI site found at 178
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal EcoRI site found at 1378
    Illegal XbaI site found at 25
    Illegal PstI site found at 1982
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal EcoRI site found at 1378
    Illegal XbaI site found at 25
    Illegal PstI site found at 1982
    Illegal NgoMIV site found at 2340
    Illegal NgoMIV site found at 2919
    Illegal NgoMIV site found at 4614
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 1641


Assembly

The existing pDR5-RUBY plasmid was subjected to enzymatic digestion (enzymes used: SmaI , PstI ), and the digested plasmid was ligated to the corresponding NCED3 promoter using homologous recombination enzymes (ClonExpress II One Step Cloning Kit, Vazyme Biotech). Subsequently, the ligated plasmid was transformed into Escherichia coli for replication and amplification, followed by successful assembly validation through sequencing. The assembled construct was preserved for future use.

parts2
Fig.1 The construction of Pro:NCED3-RUBY
parts2
Fig.2 Plasmid NCED3-RUBY


Reference

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