Composite

Part:BBa_K4430010

Designed by: Ruyi Shi   Group: iGEM22_GYHS   (2022-09-20)


GFP-TFP

It is the key part that is responsible for expressing green fluorescent protein (GFP) fusion protein of tail fiber protein (TFP). TFP is a receptor binding protein (RBP) from the genome of E. coli phage T7. GFP emits green fluorescence under the confocal laser scanning microscope. Under such microscope, green fluorescence on the cell surface of E.coli after incubation with GFP-TFP proteins indicates specific binding of the proteins to the bacteria. We have demonstrated that GFP-TFP can bind strongly to the cell surfaces of E. coli strains.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 2201
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 2169
    Illegal AgeI site found at 1824
    Illegal AgeI site found at 2262
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 641
    Illegal BsaI.rc site found at 1263



Usage and Results

Plasmid Construction

We designed our functional part (GFP-TFP) and cloned it into pET28a backbone plasmid chemical synthesized by Tsingke Biotechnology Co., Ltd. Using fusion protein GFP-TFP, we can confirm whether TFP binds strongly to the cell surfaces of E. coli strains. We used Gibson assembly method to construct pET28a-GFP-TFP plasmid. The gel electrophoresis results (Figure 1) showed that the GFP-TFP gene was 2676 bp, as expected. In addition, we confirmed the results by sequencing.

Figure 1 Nucleic acid gel electrophoresis results of GFP-TFP.

Protein expression test

SDS-PAGE electrophoresis was used to check the expression of GFP-TFP protein (90.9 kDa). As shown in Figure 2, this protein has been successfully expressed and purified.

Figure 2 Protein SDS-PAGE electrophoresis results of GFP-TFP.

Specificity of the GFP-TFP

To confirm whether TFP binds strongly to the cell surfaces of E. coli strains, the specificity of the GFP-TFP was evaluated using common pathogenic bacteria strains as competitors. As we expected, GFP-TFP has a good specificity toward E. coli K12 MG1655 (Figure 3)

Figure 3 GFP-TFP binds strongly to the cell surfaces of E. coli strain K12 MG1655.
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