Plasmid_Backbone

Part:BBa_K3841023

Designed by: ktherkelsen   Group: iGEM21_DTU-Denmark   (2021-10-16)


pGGAselect Destination Plasmid

pGGAselect destination plasmid is a 2,220 bp cloning vector useful for Golden Gate Assembly desgined by New England Biolabs (NEB) [1]. The plasmid contains two BsaI, BsmBI and BbsI restriction sites; digestion with BsmBI releases an 87 bp fragment and a 2,133 bp vector backbone fragment to receive your insert or assembly. Below is the pGGAselect plasmid map from NEB Golden Gate Assembly Kit (BsaI-H®v2) protocol.

Plasmid map of pGGAselect destination plasmid. All features are seen and can be seen in the seuqnece below.


Usage
pGGAselect is suitable for Golden Gate Assembly. Either digest the backbone with BsaI or BsmBI for prepare it for insert or assembly.

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Plasmid lacks a prefix.
    Plasmid lacks a suffix.
    Illegal EcoRI site found at 296
    Illegal EcoRI site found at 434
    Illegal PstI site found at 234
  • 12
    INCOMPATIBLE WITH RFC[12]
    Plasmid lacks a prefix.
    Plasmid lacks a suffix.
    Illegal EcoRI site found at 296
    Illegal EcoRI site found at 434
    Illegal PstI site found at 234
    Illegal NotI site found at 445
  • 21
    INCOMPATIBLE WITH RFC[21]
    Plasmid lacks a prefix.
    Plasmid lacks a suffix.
    Illegal EcoRI site found at 296
    Illegal EcoRI site found at 434
    Illegal BglII site found at 356
    Illegal BamHI site found at 290
    Illegal XhoI site found at 284
    Illegal XhoI site found at 439
  • 23
    INCOMPATIBLE WITH RFC[23]
    Plasmid lacks a prefix.
    Plasmid lacks a suffix.
    Illegal EcoRI site found at 296
    Illegal EcoRI site found at 434
    Illegal PstI site found at 234
  • 25
    INCOMPATIBLE WITH RFC[25]
    Plasmid lacks a prefix.
    Plasmid lacks a suffix.
    Illegal EcoRI site found at 296
    Illegal EcoRI site found at 434
    Illegal PstI site found at 234
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Plasmid lacks a prefix.
    Plasmid lacks a suffix.
    Illegal BsaI site found at 395
    Illegal BsaI.rc site found at 320


References

[1] New England Biolabs, url: https://international.neb.com/-/media/nebus/page-images/tools-and-resources/interactive-tools/dna-sequences-and-maps/text-documents/pggaselectfsa.txt?rev=87941bf93a1d49f28c69930c8289e15f&hash=4A71E1E81374F863510F52544BA65704

[edit]
Categories
Parameters
None