Coding

Part:BBa_K3612009:Design

Designed by: Jesus Durand, Matias Rojas, Diego Benites, Maria Castromonte.   Group: iGEM20_UPCH_Peru   (2020-10-19)


Tenebrio molitor antifreeze protein (TmAFP)


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


Design Notes

Sequence optimized for Pseudoalteromonas nigrifaciens.


Source

Genbank accession number: AF159114.1

References

(1) Xiang H, Yang X, Ke L, Hu Y. The properties, biotechnologies, and applications of antifreeze proteins. Int J Biol Macromol. 2020 Jun 15;153:661–75.

(2) Mahatabuddin S, Tsuda S. Applications of antifreeze proteins: Practical use of the quality products from Japanese fishes. In: Advances in Experimental Medicine and Biology. Springer New York LLC; 2018. p. 321–37.

(3) Balamurugan S, Ann JS, Varghese IP, Murugan SB, Harish MC, Kumar SR, et al. Heterologous expression of Lolium perenne antifreeze protein confers chilling tolerance in tomato. J Integr Agric. 2018 May 1;17(5):1128–36.

(4) Bredow, M., Vanderbeld, B., & Walker, V. K. (2017). Ice-binding proteins confer freezing tolerance in transgenic Arabidopsis thaliana. Plant Biotechnology Journal, 15(1), 68–81.

(5) Bredow M, Walker VK. Ice-binding proteins in plants. Front Plant Sci. 2017;8(December):1–15.

(6) Davies, P. L. (2014). Ice-binding proteins: A remarkable diversity of structures for stopping and starting ice growth. Trends in Biochemical Sciences, Vol. 39, pp. 548–555.

(7) Liou YC, Tocilj A, Davies PL, Jia Z. Mimicry of ice structure by surface hydroxyls and water of a β-helix antifreeze protein. Nature. 2000 Jul 20;406(6793):322–4.

(8) Yue CW, Zhang YZ. Cloning and expression of Tenebrio molitor antifreeze protein in Escherichia coli. Mol Biol Rep. 2009;36(3):529–36.

(9) Bar, M., Bar-Ziv, R., Scherf, T., & Fass, D. (2006). Efficient production of a folded and functional, highly disulfide-bonded β-helix antifreeze protein in bacteria. Protein Expression and Purification, 48(2), 243–252.

(10) Middleton, A. J., Marshall, C. B., Faucher, F., Bar-Dolev, M., Braslavsky, I., Campbell, R. L., … Davies, P. L. (2012). Antifreeze protein from freeze-tolerant grass has a beta-roll fold with an irregularly structured ice-binding site. Journal of Molecular Biology, 416(5), 713–724.