Coding

Part:BBa_K3215001

Designed by: Daniel Oppermann Peixoto   Group: iGEM19_UFRGS_Brazil   (2019-09-07)


phnE optimized

Since the phnE coding sequence from E. coli K-12 is defective, this part provides the DNA sequence obtained from E. coli B, which has a normal function, optimized for the E. coli K-12 translation machinery.

2019 UFRGS Brazil phnE.png


Usage and Biology

The phn Operon is one of the nine transcriptional units that are present in the Phosphate Regulon (Pho), a global regulatory mechanism involved in bacterial Pi management. It is responsible for the catabolism of phosphates and it has 14 cistrons (phnCDEFGHIJKLMNOP) that, together, are responsible for controlling the Carbon-Phosphorus (C-P) lyase activity. The C-P lyase pathway is activated upon conditions of phosphate starvation and it is responsible for converting phosphonates into 5-phosphoribosyl-α-1-diphosphate (PRPP), utilizing ATP.

phnCDE

It encodes an ATP-binding cassette, where phnC has the ATP-binding site, phnD is a periplasmic binding protein for phosphonates and phnE is a membrane spanning transport protein.

The complex formed is composed of two proteins derived from phnC, two from phnE and one solute-binding protein from phnD. Altogether, these proteins are responsible for the transport of alkylphosphonates and aminoalkylphosphonates, through the reactions:


2019 UFRGS Brazil reactions phnCDE.png


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]


[edit]
Categories
//chassis/prokaryote/ecoli
Parameters
protein