Composite

Part:BBa_K3165057

Designed by: Mohit Das   Group: iGEM19_IISc-Bangalore   (2019-10-20)


T7 - nMag + T7 - pMag + mOrange (for Bacillus subtilis)

This composite system consists of the entire optogenetic T7 RNA Polymerase system with mOrange under the PcpcG2 promoter.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 828
    Illegal BsaI site found at 1723
    Illegal BsaI.rc site found at 2257
    Illegal BsaI.rc site found at 2296

Usage and Biology

The T7 DNA-dependent RNA Polymerase is commonly used for protein expression due to its high processivity and high selectivity for T7 promoter. Bacterial RNA Polymerase cannot transcribe the genes under the T7 promoter, so under normal circumstances, the genes under the T7 promoter will not be transcribed and hence the gene product won't be synthesized (some lysogenic bacterial strains can produce the proteins under T7 expression).

Thus we can use the T7 expression system in our model organism for protein expression. Splitting up of the T7 RNA Polymerase into two separate domains, each linked to a photo-sensitive dimerizing unit is an effective means to regulate protein expression in a cell. Upon shining light of appropriate frequency (blue light for the T7 system), the photo-sensitive domains dimerize leading to the functional reactivity of the T7 RNA Polymerase. Upon stimulation, the T7 RNA Polymerase becomes functional and transcribes the genes downstream to the T7 promoter, providing a dynamic means to control protein expression.

This part uses mOrange fluorescent protein, for characterising the functional activity of the composite system. This part encodes for the entire opto T7 RNA Polymerase system with mOrange as the reporter gene for the light-mediated regulation of protein expression.


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