Part:BBa_K1462580:Design
GAL1+GBD+SH3+SH3+PDZ+PDZ+Tom22+ADH1
- 10INCOMPATIBLE WITH RFC[10]Illegal PstI site found at 2082
- 12INCOMPATIBLE WITH RFC[12]Illegal PstI site found at 2082
- 21INCOMPATIBLE WITH RFC[21]Illegal BamHI site found at 615
Illegal BamHI site found at 648
Illegal BamHI site found at 820
Illegal BamHI site found at 1029
Illegal BamHI site found at 1238
Illegal BamHI site found at 1561
Illegal BamHI site found at 1884
Illegal XhoI site found at 801
Illegal XhoI site found at 1010
Illegal XhoI site found at 1219
Illegal XhoI site found at 1542
Illegal XhoI site found at 1865 - 23INCOMPATIBLE WITH RFC[23]Illegal PstI site found at 2082
- 25INCOMPATIBLE WITH RFC[25]Illegal PstI site found at 2082
Illegal AgeI site found at 150 - 1000COMPATIBLE WITH RFC[1000]
Design Notes
Scaffold protein, with a leading peptide Tom22, can locate on the outer mitochondria membrane with the scale of GBD: SH3: PDZ==1:2:2.We built up the scale to affirm the best scale. In this way , we tried to fix the PRK, RuBisCO, CA to a limited space to make full use of ATP and CO2 so that we coule improve the pyruvate offering to the butanol pathway
Source
The GBD,SH3,PDZ domain are synthesis from Genewiz, the Tom22 is from the PCR with the template S.cerevisiae genome.GAL1 and ADH1 is from the plate of IGEM.
References
[1] John E Dueber, Gabriel C Wu, G Reza Malmirchegini, et al.Synthetic protein scaffolds provide modular control over metabolic flux.Nat Biotechnol. 2009 Aug;27(8):753-9.
[2] Schultz, J. et al. Specific interactions between the syntrophin PDZ domain and voltage-gated sodium channels. Nat Struct Biol 5, 19-24 (1998).
[3] Kim, A.S., Kakalis, L.T., Abdul-Manan, N., Liu, G.A. & Rosen, M.K. Autoinhibition and activation mechanisms of the Wiskott-Aldrich syndrome protein. Nature 404, 151-158 (2000).
[4] Wu, X. et al. Structural basis for the specific interaction of lysine-containing proline-rich peptides with the N-terminal SH3 domain of c-Crk. Structure 3, 215-226 (1995).
[5] Dueber, J.E., Yeh, B.J., Chak, K. & Lim, W.A. Reprogramming control of an allosteric signaling switch through modular recombination. Science 301, 1904-1908 (2003).