Difference between revisions of "Part:BBa K823031"

Revision as of 16:14, 26 September 2012

cotZ: B. subtilis spore crust protein (-2aa)

This part codes for one of the outer most spore crust proteins in B. subtilis. We designed this part in the Freiburg standard (Assembly 25) to use it as a platform for protein display on B. subtilis spores.

The aim of the LMU-Munich 2012 project is to create spores that display fusion proteins on their crust. There are several different proteins forming the spore coat layers of Bacillus subtilis spores. On the outermost layer, the so called spore crust, the CotZ and CgeA proteins are located ([http://www.ncbi.nlm.nih.gov/pubmed?term=imamura%20et%20al.%202011%20spore%20crust Imamura et al., 2011]). This is why we used them to create functional fusion proteins to be expressed on our Sporobeads.

Protein distribution in spore coat of Bacillus subtilis

The cluster cotVWXYZ contains the gene cotZ which is cotranscribed with cotY regulated by the promoter P_cotYZ.

Gene clusters of cotZ and cgeA

For our project the first step was to fuse gfp to cgeA and cotZ as a proof of principle. This way we would determine if it is possible to display proteins on the spore crust and if their expression has any effect on spore formation.

We were finally able to display GFP on B. subtilis spores by using cotZ (see device BBa_K823049).

NOTE: There are two versions of the cotZ gene in the registry, cotZ -2aa (this part), and cotZ. For our purpose cotZ -2aa, worked better.

For creating fusion proteins for the Sporobeads, the genes gfp, cotZ and cgeA were brought into Freiburg Standard whereas we created two different versions of the crust proteins. The restriction site NgoMIV was inserted just after the startcodon of the gene of the crust protein. Since this restriction site adds six additional basepairs the resulting gene is two codons longer CotZ. It is not know if this insertion has any effect on protein expression that is why we created an additional version in which we deleted the following six basepairs, CotZ-2aa.

See all the details about the LMU-Munich 2012 project [http://2012.igem.org/Team:LMU-Munich/Spore_Coat_Proteins here].

Sequence and Features

Assembly Compatibility:

10
COMPATIBLE WITH RFC[10]
12
COMPATIBLE WITH RFC[12]
21
INCOMPATIBLE WITH RFC[21]
Illegal BglII site found at 42
23
COMPATIBLE WITH RFC[23]
25
COMPATIBLE WITH RFC[25]
1000
COMPATIBLE WITH RFC[1000]

Revision as of 16:13, 26 September 2012 (view source) Dexios (Talk \| contribs) ← Older edit		Revision as of 16:14, 26 September 2012 (view source) Dexios (Talk \| contribs) Newer edit →
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−	'''NOTE: There are two versions of the <i>cotZ</i> gene in the registry, [[Part:BBa_K823031\|<i>cotZ</i> -2aa]], this part and [[Part:BBa_K823032\|<i>cotZ</i>]]. For our purpose <i>cotZ</i> -2aa, worked better.'''	+	'''NOTE: There are two versions of the <i>cotZ</i> gene in the registry, [[Part:BBa_K823031\|<i>cotZ</i> -2aa]] (this part), and [[Part:BBa_K823032\|<i>cotZ</i>]]. For our purpose <i>cotZ</i> -2aa, worked better.'''

	For creating fusion proteins for the Sporobeads, the genes gfp, cotZ and cgeA were brought into Freiburg Standard whereas we created '''two different versions''' of the crust proteins. The restriction site NgoMIV was inserted just after the startcodon of the gene of the crust protein. Since this restriction site adds six additional basepairs the resulting gene is two codons longer CotZ. It is not know if this insertion has any effect on protein expression that is why we created an additional version in which we deleted the following six basepairs, CotZ-2aa.		For creating fusion proteins for the Sporobeads, the genes gfp, cotZ and cgeA were brought into Freiburg Standard whereas we created '''two different versions''' of the crust proteins. The restriction site NgoMIV was inserted just after the startcodon of the gene of the crust protein. Since this restriction site adds six additional basepairs the resulting gene is two codons longer CotZ. It is not know if this insertion has any effect on protein expression that is why we created an additional version in which we deleted the following six basepairs, CotZ-2aa.