Difference between revisions of "Part:BBa K729003"
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===Characterisation===
 
===Characterisation===
  
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Congo red binding assays were preformed to determine the presence of curli fibers.  
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The characterisation of curli expression will be done via a Congo Red agar assay. Congo Red is a diazo dye that causes cells expressing curlis to be stained red. Hence, Congo Red agar provides a convenient assay to determine if the expression of curlis has been successful.
 +
 
 +
The linear structure of the amyloid curli fibril allows the formation of hydrogen bonds with the Congo Red agar, while alternative structures are forced to form ionic bonds. These ionic bonds allow the rapid dissipation of the dye colour, resulting in the formation of pale plaques where curli negative growth occurs. The hydrogen bonds do not facilitate this removal of the dye colour, hence their growth as red colonies. This assay acts as a highly effective indicator of Curli expression.
 +
 
 +
Besides detecting the expression of curlis, we also want to ascertain the capabilities of the biofilm formed by the curliated cells and more specifically the strength of their adhesion to the plastic itself.
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As such, we have worked with the Engineering Faculty Rapid Design and Fabrication Facility (RDFF) to design and construct a small scale shear device which is used to quantitatively analyse the critical shear force that can be applied to biofilms expressing the UCL '12 curli construct (BBa_K729018) before their dettachment from the surface of plastics, and as such tell us how strong the bond between cell and plastic are due to the curli fibrils.
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The approach taken in generating and using this device as a characteristion method is truly novel. Where previously characterisation for a construct such as this has been very qualitative, merely detecting the presence of cells or biofilm or at most measuring biofilm thickness, this new apparatus creates a variable shear gradient across the surface of the biofilm at a single rotational speed. This means that the interface between where biofilm is present and where it is not after the test is used to calculate (using the equation below) and quantify the binding strength of the surface proteins.
  
 
===Variations===
 
===Variations===

Revision as of 10:31, 30 September 2012

csgBAEFG operon

Stand alone csgBAEFG operon for curli synthesis. Adapted from Lyon 2011. User experience uploaded on the original page here: https://parts.igem.org/Part:BBa_K540000:Experience#User_Reviews.

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal AgeI site found at 1683
  • 1000
    COMPATIBLE WITH RFC[1000]

Characterisation

The characterisation of curli expression will be done via a Congo Red agar assay. Congo Red is a diazo dye that causes cells expressing curlis to be stained red. Hence, Congo Red agar provides a convenient assay to determine if the expression of curlis has been successful.

The linear structure of the amyloid curli fibril allows the formation of hydrogen bonds with the Congo Red agar, while alternative structures are forced to form ionic bonds. These ionic bonds allow the rapid dissipation of the dye colour, resulting in the formation of pale plaques where curli negative growth occurs. The hydrogen bonds do not facilitate this removal of the dye colour, hence their growth as red colonies. This assay acts as a highly effective indicator of Curli expression.

Besides detecting the expression of curlis, we also want to ascertain the capabilities of the biofilm formed by the curliated cells and more specifically the strength of their adhesion to the plastic itself.

As such, we have worked with the Engineering Faculty Rapid Design and Fabrication Facility (RDFF) to design and construct a small scale shear device which is used to quantitatively analyse the critical shear force that can be applied to biofilms expressing the UCL '12 curli construct (BBa_K729018) before their dettachment from the surface of plastics, and as such tell us how strong the bond between cell and plastic are due to the curli fibrils.

The approach taken in generating and using this device as a characteristion method is truly novel. Where previously characterisation for a construct such as this has been very qualitative, merely detecting the presence of cells or biofilm or at most measuring biofilm thickness, this new apparatus creates a variable shear gradient across the surface of the biofilm at a single rotational speed. This means that the interface between where biofilm is present and where it is not after the test is used to calculate (using the equation below) and quantify the binding strength of the surface proteins.

Variations

Two additional variations on the original biobrick were designed. These include a T7 and constitutive promoter.

References