Difference between revisions of "Part:BBa K3365065"

 
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<partinfo>BBa_K3365065 short</partinfo>
 
<partinfo>BBa_K3365065 short</partinfo>
  
This part is a off-target detecting platform for dCas9-ω. We put this part in a plasmid and transfer it into △<i>rpoZ</i>-MG1655, a strain of E.coli that was koncked out <i>rpoZ</i>. If dCas9-ω is binding to this lure sequence, the submit Omega fused to dCas9 C-terminal can activate the expression of reporter by recruiting the RNAP holoenzyme and the cell would emit green fluorescence,which means dCas9-ωis off-target, else the weak promoter and the lack of <i>rpoZ</i> makes the reporter cannot express or just have a quite low expression level.  
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This part is an off-target detecting platform for dCas9-ω. We put this part in the plasmid and transform it into △<i>rpoZ</i>-MG1655, a strain of E.coli that is koncked out <i>rpoZ</i>. If dCas9-ω is binding to the lure sequence, the subnit Omega fused to dCas9 C-terminal can activate the expression of reporter by recruiting the RNAP holoenzyme and the cell would emit green fluorescence,which means dCas9-ωis off-target, else the weak promoter and the lack of <i>rpoZ</i> makes the reporter cannot express or just have a quite low expression level.  
  
 
According to the prediction model, the off-target rate of the lure sequence in this part is 0.37543%.
 
According to the prediction model, the off-target rate of the lure sequence in this part is 0.37543%.

Latest revision as of 13:18, 27 October 2020


Fourth lure sequence upstream of eGFP

This part is an off-target detecting platform for dCas9-ω. We put this part in the plasmid and transform it into △rpoZ-MG1655, a strain of E.coli that is koncked out rpoZ. If dCas9-ω is binding to the lure sequence, the subnit Omega fused to dCas9 C-terminal can activate the expression of reporter by recruiting the RNAP holoenzyme and the cell would emit green fluorescence,which means dCas9-ωis off-target, else the weak promoter and the lack of rpoZ makes the reporter cannot express or just have a quite low expression level.

According to the prediction model, the off-target rate of the lure sequence in this part is 0.37543%.

Lure sequence upstream of eGFP.png

Fig:Schematic diagram of this part

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal NheI site found at 66
    Illegal NheI site found at 89
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BamHI site found at 834
    Illegal XhoI site found at 843
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]