Difference between revisions of "Part:BBa K1484104"

 
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<partinfo>BBa_K1484104 short</partinfo>
 
<partinfo>BBa_K1484104 short</partinfo>
  
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Localises proteins to nucleus. Effective with Fluorescents
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Localisation tag for plant reporters, which localises them to the nucleus. Compatible with the Plant Syntax (RFC105) as a C-Terminal fusion.
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<!-- Add more about the biology of this part here
 
 
===Usage and Biology===
 
===Usage and Biology===
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Add this tag to the 3' of your ORF. IMPORTANT: this contains flanking restriction sites for use with RFC105 compatible assembly.
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When used in conjunction with fluorescent reporters, nuclei are clearly visible with 5x magnification.
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This tag (in Marchantia) does not appear to interfere with plant growth, in contrast to histone-binding localisation tags (for example, H2B), which may do so.
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Its use is extensively recorded in the literature. The following images illustrate examples in A. thaliana:
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[[img]]
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As well as in Marchantia:
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Image taken on a Leica D6000 confocal microscope, using excitation laser of 488nm and emission range 525-540.
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This tag can be very useful for counting cells, finding cell seeds in order to use balloon segmentation (in conjunction with [[LTI]]) and also for visualizing multiple channels of fluorescent proteins across constructs.
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In conjunction with image analysis techniques, the use of this tag can enable high-throughput quantification of gene expression [when standardized sample conditions  are used].
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As a simple example of the kind of analysis which can be performed with basic image analysis techniques:
  
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The identification of nuclei was done using Python's scipy.measurements.image.ndlabel method.
 
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<span class='h3bb'>Sequence and Features</span>
 
<span class='h3bb'>Sequence and Features</span>

Revision as of 15:58, 10 October 2014

N7 nuclear localisation tag

Localisation tag for plant reporters, which localises them to the nucleus. Compatible with the Plant Syntax (RFC105) as a C-Terminal fusion.


Usage and Biology

Add this tag to the 3' of your ORF. IMPORTANT: this contains flanking restriction sites for use with RFC105 compatible assembly.

When used in conjunction with fluorescent reporters, nuclei are clearly visible with 5x magnification.

This tag (in Marchantia) does not appear to interfere with plant growth, in contrast to histone-binding localisation tags (for example, H2B), which may do so.

Its use is extensively recorded in the literature. The following images illustrate examples in A. thaliana: img As well as in Marchantia:

Image taken on a Leica D6000 confocal microscope, using excitation laser of 488nm and emission range 525-540.

This tag can be very useful for counting cells, finding cell seeds in order to use balloon segmentation (in conjunction with LTI) and also for visualizing multiple channels of fluorescent proteins across constructs.

In conjunction with image analysis techniques, the use of this tag can enable high-throughput quantification of gene expression [when standardized sample conditions are used].

As a simple example of the kind of analysis which can be performed with basic image analysis techniques:

The identification of nuclei was done using Python's scipy.measurements.image.ndlabel method. Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 1
    Illegal BsaI.rc site found at 257
    Illegal SapI.rc site found at 24