Difference between revisions of "Part:BBa K1150049"
m |
|||
| Line 1: | Line 1: | ||
__NOTOC__ | __NOTOC__ | ||
<partinfo>BBa_K1150049 short</partinfo> | <partinfo>BBa_K1150049 short</partinfo> | ||
| − | Behind a strong CMV promoter a HA-tag, a NLS and | + | Behind a strong CMV promoter a HA-tag, a NLS and dCas9 in a shortened version followed by another NLS and a BGH terminator were assembled via the iGEM cloning method. |
The truncation of the huge dCas9 gene was performed by PCR over the backbone (=dCas9 in pSB1C3). The part between the primer pair is not amplified. One of the primers has an overlap compatible to the first bases of the other one, so that after this PCR a one fragment Gibson assembly could be performed. | The truncation of the huge dCas9 gene was performed by PCR over the backbone (=dCas9 in pSB1C3). The part between the primer pair is not amplified. One of the primers has an overlap compatible to the first bases of the other one, so that after this PCR a one fragment Gibson assembly could be performed. | ||
===Usage and Biology=== | ===Usage and Biology=== | ||
| − | This part can be used in the uniCAS Toolkit of team Freiburg as a shorter version of | + | This part can be used in the uniCAS Toolkit of team Freiburg as a shorter version of dCas9. |
| − | Truncation 3: 1131bp of the anterior part of | + | Truncation 3: 1131bp of the anterior part of dCas9 are missing |
<!-- --> | <!-- --> | ||
Revision as of 23:19, 4 October 2013
Truncated CMV dCas9 Device #3 Behind a strong CMV promoter a HA-tag, a NLS and dCas9 in a shortened version followed by another NLS and a BGH terminator were assembled via the iGEM cloning method. The truncation of the huge dCas9 gene was performed by PCR over the backbone (=dCas9 in pSB1C3). The part between the primer pair is not amplified. One of the primers has an overlap compatible to the first bases of the other one, so that after this PCR a one fragment Gibson assembly could be performed.
Usage and Biology
This part can be used in the uniCAS Toolkit of team Freiburg as a shorter version of dCas9. Truncation 3: 1131bp of the anterior part of dCas9 are missing
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 576
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
Functional Parameters
To verify the expression of the truncated dCas9 version we performed westernblot with anti-HA antibody.
