Composite

Part:BBa_K243036:Design

Designed by: Freiburg Bioware09   Group: iGEM09_Freiburg_bioware   (2009-10-20)
Revision as of 02:30, 22 October 2009 by Timo (Talk | contribs) (→‎Source)

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His-Dig-Split Linker-Fok_a


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    INCOMPATIBLE WITH RFC[21]
    Illegal BglII site found at 272
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal SapI.rc site found at 1126


Design Notes

This part is only available in the pJS419 vector. We applied the His tag to enable a simultaneous purification of constructs with a Strep tag. The used DigoxigeninA tag allows coupling to a Fluorescein linked oligo. Emanating from our 3D modeling this combination of DigA tagged oligos and the construct containing the protein domain Fok_a is more efficient than the use of a combination of FluA tagged oligos with a construct containing Fok_a. To avoid interactions between the DigA tag with the connected protein domain Fok_a, we applied the Split Linker. The linker itself has no influence on the connected parts. We decided to use the Split Linker for this construct to get a longer distance between DigA tag and Fok_a to guarantee the independent function of both parts. This linker is an improved part of the team Freiburg08 and it is suitable for fusion proteins. The properties of the Split Linker are a good compromise between the stability and the distance of the connection between protein domain Fok_a and the anticalin tag. Commented GenBank file

Source

Designed and planed by team Freiburg Bioware09. Cloned by serial cloning steps.

References