Part:BBa_K2969011
CI-SuMMVsite
An engineered CI transcription factor. We insert the SuMMV protease recognition sequence between N-terminal and C-terminal of CI. Because the structure of CI has been characterized, the function of the fragment between N-terminal and C-terminal is linking. So, we choose this inserting site to avoid bigger influence. In our project, this kind of CI can be cleaved by SuMMV so that it will lose activity.
Characterization
In UCAS-China 2019 project, TEV protease is an important part of our switches. According to resent research, we can find many similar proteases to build similar cold-inducible switches such as TVMV protease (cleavage site TVRFQS), SuMMV protease (cleavage site EEIHLQ), HRV3C (cleavage site LEVLFQGP).
To realize the function of sequence switches, we combine the two different cold-inducible switches. However, we should make sure that these two combinations have no influence on each other. Thus, we design experiments to verify the orthogonality of different cold-inducible switch. That is the orthogonality of different proteases and their cleavage sites. We insert all the four cleavage sites into the transcription factor CI to build the relation between protease and transcription factor. Then we transform all the 16 kinds of combination of protease and CI into E.coli using sf-gfp as the reporter gene (GOI). Only the right pair can erase the inhibition of CI and trigger the expression of sf-gfp. Through the results of the fluorescence expression, we can find whether there are interactions between one protease and one cleavage site. The results below demonstrate good orthogonality between these proteases and their cleavage sites.
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
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