parts.igem.org:Bug reports

Revision as of 00:14, 12 June 2006 by WingZero (Talk | contribs)

Specific Concerns:

General Concerns:

  1. Reshma 14:56, 16 Nov 2005 (EST): The registry appears to have some strange behavior when you try to enter a feature is whose starting coordinate is greater than its ending coordinate. It highlights two small stretches of sequence. (I was doing this in an effort to see if I could indicate features on the opposite strand.)
  2. Reshma 14:56, 16 Nov 2005 (EST): When you add a feature that is only 1 nucleotide long (like a mutation). It highlights 4 bases in the sequence pane instead of 1.
    • BC 15:23, 8 Dec 2005 (EST): The same bug seems to occur for other small features. It seems to highlight not just 4 bases extra but everyting up to the next "gap" in the sequence display, i.e. up to the next multiple of 10. Based on a small sample size (B0036 in E7103 and I7102 and R0085)
    • Done - the new feature display does not have this bug - Randy
  3. Reshma 15:52, 16 Nov 2005 (EST): Somehow I am unable to edit the sequence of the part I just created (BBa_I50000). When I go to edit the sequence, it seems to just concatenate the sequence I type in rather than replacing the original sequence.
    • Done - This bug was a result of a browser limit on the length of a line in a text box. We now display sequences with limited line length. - Randy
  4. RS 15:15, 13 March 2006 (EST): The icon for primers doesn't show up in the deep component picture when primers are included as parts. Just a gap is shown.
    • Done - The icons have been added - Randy
  5. RS 18:31, 13 March 2006 (EST): In part BBa_I51000, the full scar does not appear between BBa_B0045 and BBa_B0046. Two bases at the end of the scar are deleted (AG). I think that there might be a software error because BBa_B0046 begins with an ATG though it is not a coding sequence so the AG should not be deleted.
  6. RS 17:20, 14 March 2006 (EST): I want to rename a part from pSB5AC4 to pSB5AC5. When I enter in the new part name, it doesn't save it.
  7. Rshetty 17:14, 1 June 2006 (EDT): Although CDS's in the reverse orientation now have their graphics displayed properly, -35 and -10 regions do not.
  8. RS 15:48, 2 June 2006 (EDT): pSB5A5 doesn't have any information on it part main page even though it has [http://parts.mit.edu/d/parts/partsdb/part_info.cgi?part_name=pSB5A5 hard information].
    • Fixed with new release - Randy
  9. WingZero 20:14, 11 June 2006 (EDT) Projects page only contains the text "There are no" in bold. Probably should finish that sentence.