User:Scmohr/Specialized Doc Score
=Additional (or Modified) Documentation Required for Specific Categories of Simple Parts= (Relative to All Parts List of 8/20/07)
Scott C. Mohr (8/21/07)
Protein coding sequences (CDS’s) / Repressors and Activators
ADD:
Repressor? ______ (yes/no) Activator______ (yes/no)
N.B. Both choices are necessary since some proteins are repressors under some circumstances and activators under other circumstances.
Regulatory ligands/effects: _____________________ (list in a box?)
OMIT: E.C. number
Protein coding sequences (CDS’s) / Reporters
ADD:
Fluorescent ? yes/no b. Luminescent ? yes/no c. Other ? __________
Spectroscopic data: (a) absorption max. ______ m (b) emission max. ______ m (c) luminescent max. ______ m (d) other notable spectroscopic features: _____________ _________________________________________________ _________________________________________________ Annotation to the IP-issue entry: VERY IMPORTANT FOR REPORTERS!
OMIT: E.C. number
Protein coding sequences (CDS’s) / Uncategorized
ADD: nothing OMIT: E.C. number Protein coding sequences (CDS’s) / Fusion proteins (new category)
ADD:
Method used to fuse the two components. Feature annotation of the linker spanning the two fused segments Sources of both sequences.
OMIT: E.C. number(s) – if inappropriate
Ribosome binding sSites (RBS’s
ADD: nothing OMIT: E.C. number SwissProt number
Terminators
ADD: nothing OMIT: E.C. number SwissProt number
Promoters (suggested renaming of “Regulatory regions”)
ADD: •In the part “long description,” INDICATE SPECIFICALLY IF THIS IS A COMPOSITE PART (i.e. whether or not it encodes a repressor/activator binding site, and if so, the identity of the repressor/activator and co-repressor/inducer.) •Under dependencies, be sure to include chassis type, growth conditions and any other key factors that relate to the promoter function. OMIT: E.C. number SwissProt number
RNA (suggestions needed)
ADD: nothing OMIT: E.C. number SwissProt number
DNA (suggestions needed)
ADD: nothing OMIT: E.C. number SwissProt number
Conjugation (suggestions needed)
ADD: nothing OMIT: E.C. number SwissProt number