DNA
AmyA

Part:BBa_K1195001

Designed by: Clarice Harrison   Group: iGEM13_BYU_Provo   (2013-08-28)
Revision as of 22:05, 26 September 2013 by Mschellhous (Talk | contribs)

Amylase A

This part contains the gene for α-Amylase, a calcium metalloenzyme that hydrolyzes alpha bonds of long-chain carbohydrates. As a metalloenzyme, α-Amylase is nonfunctional in the absence of calcium. In the presence of calcium, α-Amylase is capable of inhibiting biofilm growth by hydrolyzing the polysaccharides that help compose the extracellular polymeric substance (EPS), which is the fundamental component of bacterial biofilms.

Sequence and Features


Assembly Compatibility:
  • 10
    INCOMPATIBLE WITH RFC[10]
    Illegal PstI site found at 874
  • 12
    INCOMPATIBLE WITH RFC[12]
    Illegal PstI site found at 874
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    INCOMPATIBLE WITH RFC[23]
    Illegal PstI site found at 874
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal PstI site found at 874
  • 1000
    COMPATIBLE WITH RFC[1000]

atgCGTAATC CCACGCTGTT ACAATGTTTT CACTGGTATT ACCCGGAAGG CGGTAAGCTC TGGCCTGAAC TGGCCGAGCG CGCCGACGGT TTTAATGATA TTGGTATCAA TATGGTCTGG TTGCCGCCCG CCTATAAAGG CGCATCGGGC GGGTATTCGG TCGGCTACGA CTCCTATGAT TTATTTGATT TAGGCGAGTT TGATCAGAAA GGCAGCATCC CTACTAAATA TGGCGATAAA GCACAACTGC TGGCCGCCAT TGATGCTCTG AAACGTAATG ACATTGCGGT GCTGTTGGAT GTGGTAGTCA ACCACAAAAT GGGCGCGGAT GAAAAAGAAG CTATTCGCGT GCAGCGTGTA AATGCTGATG ACCGTACGCA AATTGACGAA GAAATCATTG AGTGTGAAGG CTGGACGCGT TACACCTTCC CCGCCCGTGC CGGGCAATAC TCGCAGTTTA TCTGGGATTT CAAATGTTTT AGCGGTATCG ACCATATCGA AAACCCTGAC GAAGATGGCA TTTTTAAAAT TGTTAACGAC TACACCGGCG AAGGCTGGAA CGATCAGGTT GATGATGAAT TAGGTAATTT CGATTATCTG ATGGGCGAGA ATATCGATTT TCGCAATCAT GCCGTGACGG AAGAGATTAA ATACTGGGCG CGCTGGGTGA TGGAACAAAC GCAATGCGAC GGTTTTCGTC TTGATGCGGT CAAACATATT CCAGCCTGGT TTTATAAAGA GTGGATCGAA CACGTACAGG AAGTTGCGCC AAAGCCGCTG TTTATTGTGG CGGAGTACTG GTCGCATGAA GTTGATAAGC TGCAAACGTA TATTGATCAG GTGGAAGGCA AAACCATGCT GTTTGATGCG CCGCTGCAGA TGAAATTCCA TGAAGCATCG CGCATGGGGC GCGACTACGA CATGACGCAG ATTTTCACGG GTACATTAGT GGAAGCCGAT CCTTTCCACG CCGTGACGCT CGTTGCCAAT CACGACACCC AACCGTTGCA AGCCCTCGAA GCGCCGGTCG AACCGTGGTT TAAACCGCTG GCGTATGCCT TAATTTTGTT GCGGGAAAAT GGCGTTCCTT CGGTATTCTA TCCGGACCTC TACGGTGCGC ATTACGAAGA TGTCGGTGGT GACGGGCAAA CCTATCCGAT AGATATGCCA ATAATCGAAC AGCTTGATGA GTTAATTCTC GCCCGTCAGC GTTTCGCCCA CGGTGTACAG ACGTTATTTT TCGACCATCC GAACTGCATT GCCTTTAGCC GCAGTGGCAC CGACGAATTT CCCGGCTGCG TGGTGGTCAT GTCGAACGGG GATGATGGCG AAAAAACCAT TCATCTGGGA GAGAATTACG GCAATAAAAC CTGGCGTGAT TTTCTGGGGA ACCGGCAAGA GAGAGTAGTG ACCGACGAAA ACGGCGAAGC AACCTTCTTT TGCAACGGCG GCAGCGTCAG CGTGTGGGTT ATCGAAGAGG TGATTtaa


[edit]
Categories
//collections/biofilm
Parameters
None