User:Scmohr/Sample Protein Gray boxes

< User:Scmohr
Revision as of 18:44, 21 July 2008 by Scmohr (Talk | contribs) (→‎Box Content:)

For Protein Coding Sequences - Enzyme Example:

Box Heading:

INFORMATION LINKS FOR BBa_J45014

Box Content:

NAME: [http://www.expasy.org/enzyme/2.3.1.84 Alcohol O-acetyltransferase 1]

Nickname: AAT 1 or ATF1

Source of original DNA sequence:

  • GenBank [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=Nucleotide&dopt=GenBank&val=1420813 GI: 1420813]
  • Other: n/a

Structure (PDB_ID): n/a

UniProt (Accession No.): [http://www.uniprot.org/uniprot/P40353 P40353]

Reaction (EC No.): [http://www.chem.qmul.ac.uk/iubmb/enzyme/EC2/3/1/84.html EC 2.3.1.84]

Biological Origin: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=4932&lvl=3&lin=f&keep=1&srchmode=1&unlock Saccharomyces cerevisiae]

Literature references (PubMed IDs): [http://www.ncbi.nlm.nih.gov/pubmed/8085822?dopt=Abstract PM 8085822,] [http://www.ncbi.nlm.nih.gov/pubmed/12937998?dopt=Abstract PM 12937998,] [http://www.ncbi.nlm.nih.gov/pubmed/17891501?dopt=Abstract PM 17891501]

Designer: [http://parts2.mit.edu/wiki/index.php/MIT_2006 Andre Green]

[DISCLAIMER]

Note: The database links in this box refer to reference information that may not exactly correspond to a given part, since by definition the parts have been engineered.


For Protein Coding Sequences - Repressors and Activators Example:

Box Heading:

INFORMATION LINKS FOR BBa_C0040

Box Content:

NAME: Tetracycline repressor from transposon Tn10

Nickname: tetR

Source of original DNA sequence:

  • GenBank [http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=Nucleotide&dopt=GenBank&val=42494906 GI: 42494906]
  • Other: n/a

Structure (PDB_ID): [http://www.rcsb.org/pdb/explore.do?structureId=1DU7 1DU7], [http://www.pdb.org/pdb/cgi/explore.cgi?pdbId=2NS7 2NS7]

UniProt (Accession No.): [http://www.uniprot.org/uniprot/Q6QR72 Q6QR72]

Biological Origin: [http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=562 Escherichia coli]

DNA Recognition Sequence: TCTATCATTGATAGG

Literature references (PubMed IDs): [http://www.ncbi.nlm.nih.gov/pubmed/9092630?dopt=Abstract PM 9092630], [http://www.ncbi.nlm.nih.gov/pubmed/10700280?dopt=Abstract PM 10700280]

Designer: June Rhee, Connie Tao, Ty Thomson, Louis Waldman

Note: The database links in this box refer to reference information that may not exactly correspond to a given part, since by definition the parts have been engineered.