Part:BBa_K1150063

HA-NLS-Cas9-Linker 3 AA

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HA-NLS-Cas9-Linker
Function	A new effector can be fused to this Cas9 intermediate part
Use in	Mammalians
RFC standard	Front RFC 10 & back RFC 25
Backbone	pSB1C3
Submitted by	[http://2013.igem.org/Team:Freiburg Freiburg 2013]

This intermediate part can be used to engineer your own dCas9 fusion proteins. Freiburg 2013 already fused VP16, KRAB, G9a, UVR8, PIF6 and CRY2 to dCas9. With the HA tag you can verify via wester blot if your fusion protein is expressed or you can purify the protein with affinity chromatography. The NLS makes sure your fusion protein is transported into the nucleus of mammalian cells. The short 3 amino acids linker makes connects dCas9 with your effector domain.

Usage

The front of this intermediate part is in RFC 10 standard, therefore you can ligate any favored promoter (Freiburg 2013 used SV40 and CMV promoters). The back of this part is RFC 25 standard in order to fuse an effector domain without frameshift.

Sequence and Features

Assembly Compatibility:

• 10
  COMPATIBLE WITH RFC[10]
• 12
  COMPATIBLE WITH RFC[12]
• 21
  INCOMPATIBLE WITH RFC[21]

  Illegal BglII site found at 312
  
• 23
  COMPATIBLE WITH RFC[23]
• 25
  COMPATIBLE WITH RFC[25]
• 1000
  COMPATIBLE WITH RFC[1000]