Difference between revisions of "Part:BBa K320006:Experience"

(→‎The Immunotoxin is expressed and appears in the supernatant)
(→‎The Immunotoxin is expressed and appears in the supernatant)
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[[Image:EPFL Gel1 western.jpg|400px|thumb|center| '''Gel1 (Lysates):''' We can see distinctive molecular fragments in the immunotoxin lane: The upper fragments (marked with red and purple arrows) match the molecular size of the immunotoxin of about 39 kDa. For the shorter of the two fragments the export tag pelB may have been cut off. The smaller sized fragment (green arrow) of about 20 kDa is most likely part of the degraded immunotoxin.
 
[[Image:EPFL Gel1 western.jpg|400px|thumb|center| '''Gel1 (Lysates):''' We can see distinctive molecular fragments in the immunotoxin lane: The upper fragments (marked with red and purple arrows) match the molecular size of the immunotoxin of about 39 kDa. For the shorter of the two fragments the export tag pelB may have been cut off. The smaller sized fragment (green arrow) of about 20 kDa is most likely part of the degraded immunotoxin.
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'''Gel2 (Supernatants):''' A fragment of the correct size is detected in the supernatant. The smaller fragments (green and yellow arrows) probably correspond to smaller parts of the degraded immunotoxin. ]]
 
'''Gel2 (Supernatants):''' A fragment of the correct size is detected in the supernatant. The smaller fragments (green and yellow arrows) probably correspond to smaller parts of the degraded immunotoxin. ]]
  

Revision as of 12:03, 27 October 2010


The Immunotoxin is expressed and appears in the supernatant

Growth curve of E. coli expressing the immunotoxin: In blue, we can see the growth curve of E. coli containing the empty C3 plasmid. In red, we can see the growth of E.coli transformed with the C3 plasmid containing the immunotoxin sequence. We concluded that the presence of the Immunotoxin in high concentrations may prevent E. coli from growing. The spikes might be the result of clumping of cells due to Immunotoxin's action.

We tested expression of the immunotoxin in E. coli (see [http://2010.igem.org/wiki/index.php?title=Team:EPF_Lausanne/Project/Materials_Methods Materials and Methods] for details). In a western blot analysis of whole cell lysates we were able to see bands corresponding to full length immunotoxin and possibly degraded fragments of the protein (see figure). The immunotoxin contains a PelB sequence that targets it for secretion into the periplasm. We concentrated the supernatant of both the immunotoxin and a control culture by running it through a filtering device with a 5 kDa cut-off. Running a western blot with these samples (see figure) we could show that the immunotoxin was found in the supernatant as expected.

Gel1 (Lysates): We can see distinctive molecular fragments in the immunotoxin lane: The upper fragments (marked with red and purple arrows) match the molecular size of the immunotoxin of about 39 kDa. For the shorter of the two fragments the export tag pelB may have been cut off. The smaller sized fragment (green arrow) of about 20 kDa is most likely part of the degraded immunotoxin.
Gel2 (Supernatants): A fragment of the correct size is detected in the supernatant. The smaller fragments (green and yellow arrows) probably correspond to smaller parts of the degraded immunotoxin.



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