Difference between revisions of "Part:BBa K346003"

Revision as of 09:13, 27 October 2010

RBS(B0032)+MBP(mercury metal binding peptide engineered from MerR)

This part is a combination of a rbs, a mbp, the coding sequence of a mercury metal binding peptide egineered from MerR.It was designed to function as mercury(II) binding peptide in our project.It is expressed in the cytosol and when fused with the periplasm protein Dsba or the membrane protein Lpp-OmpA, it will be expressed and translocated to the periplasm and membrane.In short, this part function as the fundamental metal binding peptide of mercury in our project.

Description

MerR, the mercury-responsible transcription factor(figure on the left), acts as an effective mercury accumulator in aquatic environment.However, as a transcription regulator, over-expression of MerR in bacteria may lead to some unpredictable side effect. Earlier work suggested that the constructed peptide only consisting of the metal binding domain can form a stable dimer with its mercury binding affinity remained and DNA binding domain and metal binding domain can function individually.Based on all these above and carefully structure analysis of MerR via 3D structure modeling, we directly tandemed two copies of metal binding domain of MerR together, to implement a mercury metal binding peptide (MBP) as is shown in the figure on the right.

The figure shows the structure of MerR and MBP. The left figure is MerR, the mercury-responsive transcription factor. The right figure shows the predicted structure of resulted metal binding peptide. Mercury ions are indicated as black balls in metal binding pockets.

Results:

Expression of proteins

The plasmid PET21a-MBP is transferred to E.coli strain BL21, which can generate T7 polymerase when induced with IPTG. Both induced cells and uninduced cells(as control) are centrifuged to get the cytosol, the periplasm and the membrane separated. The SDS-page and Western blot of the expressed proteins show that induced cells expressed an identical IPTG-inducible protein at the proper place with the size of ~10kD which consists with the predicted size, indicating that the engineered MBP can be expressed in the cytosol.

We can detected overexpression band at about 10 kD, which is similar to MBP. Then we fused a his-tag to our target protein and conducted western blot to further verify their expression. Positive band of the expected molecular weight can be detected in the cytosol, which confirm expression and localization of the target protein. We can also indicate from the SDS-PAGE that there a large number of MBPs exist in cytosol ready to bind mercury ions.

Function test

Having made sure that the protein can express normally in the cytosol, the function tests experiment are carried out with ICP-AES. To test the efficiency of mercury absorption of MBP in different concentration of mercury, the concentration gradient is set from 10^-8M to 10^-6M, the results are shown in figure 3. Our experiment shows that the efficiency of MBP increases with the increase of the mercury concentration and MBP can binding Hg(II) with high efficiency and high sensitivity from the concentration of 10^-7 M(not show in the figure) compared to that of the control.

Figure 3: Overnight cultures were diluted 1:100 and grown to final OD600=0.6-1.0. We then resuspend the culture with 1% PBS and make samples for ICP-AES according to the protocol(See more about this, please visit our wiki.)

Sequence and Features