Difference between revisions of "Part:BBa K415021"

 
Line 1: Line 1:
 
 
__NOTOC__
 
__NOTOC__
 
<partinfo>BBa_K415021 short</partinfo>
 
<partinfo>BBa_K415021 short</partinfo>
Line 5: Line 4:
 
This part displays red and green fluorescence under specific conditions.  Fluorescence is activated by presence of both LuxR and 3OC6HSL.  The LuxR is normally constitutively expressed, but can be repressed by TetR and derepressed by aTc.  Green fluorescence is repressed by LacI and red fluorescence is repressed by CI.
 
This part displays red and green fluorescence under specific conditions.  Fluorescence is activated by presence of both LuxR and 3OC6HSL.  The LuxR is normally constitutively expressed, but can be repressed by TetR and derepressed by aTc.  Green fluorescence is repressed by LacI and red fluorescence is repressed by CI.
  
This part is intended to be used along with the LacI/CI bistable toggle switch by Jim Collins.
 
  
<!-- Add more about the biology of this part here
+
Confirmation: BBa_K415021 was constructed by inserting [[Part:BBa_K182101]] into BBa_K415013, which is [[Part:BBa_K415006]] in  [[Part:pSB3K3]], a low to medium copy number plasmid. The following 1% agarose gel, prepared from agarose mix and 1% TAE and stained with SYBR® Safe DNA gel stain, presents confirmation of said construction. The part was run along the standard of Hyperladder 1. NcoI enzyme was used for the restriction mapping, resulting in bands of 414, 1256, and 4028 base pairs, which agrees with sequencing predictions. The part was also sequenced and confirmed in that way.
===Usage and Biology===
+
 
 +
Figure 1
 +
[[Image:K415021 digest.jpg|center|200px]]
 +
 
 +
 
 +
The following is the plasmid map of BBa_K415021 in backbone [[Part:pSB3K3]].
 +
 
 +
Figure 2
 +
[[Image:K415021 plasmid.jpg|center|800px]]
 +
 
 +
The fluorescence of mCherry and GFP was then quantified using FACs(Fluorescence-activated cell sorting) running two samples: -AHL and +AHL. The samples were grown overnight in 4ml of LB with 3 mM IPTG with +/- 130uM AHL and Amp antibiotic in a 37C incubator in JM2.300 cells. Plasmid pRCV3(Plux-GFP) and pINV5(pLacIQ->lacI; pLac->GFP) were used as control to ensure adequate concentrations of AHL and IPTG induction. The fluorescence of mCherry and GFP were measured in arbitrary units.
 +
 
 +
Figure 3
 +
[[Image:K415021.jpg|center|500px]]
 +
 
 +
 
 +
 
 +
The addition of AHL results in a 1385% increase in GFP fluorescence and 535% increase in mCherry fluorescence. The greater increase in fluorescence in the GFP may be attributed to the low degradation rate of the untagged GFP protein [[Part:BBa_E0040]]
 +
 
 +
The following are the FACs data sheets:
 +
 
 +
Figure 4: K415021 -AHL
 +
[[Image:K415021-AHL.png|center|500px]]
 +
 
 +
 
 +
Figure 5: K415021 +AHL
 +
[[Image:K415021+AHL.png|center|500px]]
 +
 
  
 
<!-- -->
 
<!-- -->

Revision as of 01:33, 27 October 2010

Pluxlac RBS-GFP TT PluxCI RBS-mCherry TT PtetR RBS-LuxR TT

This part displays red and green fluorescence under specific conditions. Fluorescence is activated by presence of both LuxR and 3OC6HSL. The LuxR is normally constitutively expressed, but can be repressed by TetR and derepressed by aTc. Green fluorescence is repressed by LacI and red fluorescence is repressed by CI.


Confirmation: BBa_K415021 was constructed by inserting Part:BBa_K182101 into BBa_K415013, which is Part:BBa_K415006 in Part:pSB3K3, a low to medium copy number plasmid. The following 1% agarose gel, prepared from agarose mix and 1% TAE and stained with SYBR® Safe DNA gel stain, presents confirmation of said construction. The part was run along the standard of Hyperladder 1. NcoI enzyme was used for the restriction mapping, resulting in bands of 414, 1256, and 4028 base pairs, which agrees with sequencing predictions. The part was also sequenced and confirmed in that way.

Figure 1

K415021 digest.jpg


The following is the plasmid map of BBa_K415021 in backbone Part:pSB3K3.

Figure 2

K415021 plasmid.jpg

The fluorescence of mCherry and GFP was then quantified using FACs(Fluorescence-activated cell sorting) running two samples: -AHL and +AHL. The samples were grown overnight in 4ml of LB with 3 mM IPTG with +/- 130uM AHL and Amp antibiotic in a 37C incubator in JM2.300 cells. Plasmid pRCV3(Plux-GFP) and pINV5(pLacIQ->lacI; pLac->GFP) were used as control to ensure adequate concentrations of AHL and IPTG induction. The fluorescence of mCherry and GFP were measured in arbitrary units.

Figure 3

K415021.jpg


The addition of AHL results in a 1385% increase in GFP fluorescence and 535% increase in mCherry fluorescence. The greater increase in fluorescence in the GFP may be attributed to the low degradation rate of the untagged GFP protein Part:BBa_E0040

The following are the FACs data sheets:

Figure 4: K415021 -AHL

K415021-AHL.png


Figure 5: K415021 +AHL

K415021+AHL.png


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI.rc site found at 747