Difference between revisions of "Part:BBa K5322032"
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__NOTOC__ | __NOTOC__ | ||
<partinfo>BBa_K5322032 short</partinfo> | <partinfo>BBa_K5322032 short</partinfo> | ||
+ | __TOC__ | ||
− | + | ==Usage and Biology== | |
+ | <html> | ||
+ | <p> | ||
+ | During the project, we considered that PD-L1 might be encapsulated by mussel foot protein (Mfp) during expression and release, potentially reducing therapeutic efficacy. To address this, we utilized the surface display system Lpp-OmpA(BBa_K5322035) to present our passenger protein PD-L1 on the outer membrane of <i>E. coli</i>. This would facilitate its binding with PD-1, enhancing effectiveness. Additionally, to demonstrate surface display, we inserted a flexible protein linker and a TEV protease recognition site(BBa_K5322036) between Lpp-OmpA and the PD-L1 functional domain. By incubating the cells with TEV protease, PD-L1 could be cleaved from OmpA. Detection of the PD-L1 functional domain in the supernatant would indirectly confirm the success of surface display. We designed the plasmid pET29a-J23119-Lpp-OmpA-GISS-TEVsite-PD-L1(Functional domain)-T7. | ||
+ | </p> | ||
+ | <style> | ||
+ | .center-img { | ||
+ | text-align:center; | ||
+ | } | ||
+ | </style> | ||
+ | <div class="center-img"> | ||
+ | <img src="https://static.igem.wiki/teams/5322/wet-lab/pet29a-j23119-lpp-ompa-giss-tevsite-pd-l1-functional-domain-t7-map.png" alt="pET29a-J23119-Lpp-OmpA-GISS-TEVsite-PD-L1(Functional domain)-T7" width="300"> | ||
+ | <p align="center"><b>Figure 1-1</b> Plasmid pET29a-J23119-Lpp-OmpA-GISS-TEVsite-PD-L1(Functional domain)-T7</p> | ||
+ | </div> | ||
− | |||
− | |||
− | + | </html> | |
− | + | ||
− | + | ||
+ | ==Construction of the plasmid== | ||
+ | <html> | ||
+ | <p> | ||
+ | The target fragment was amplified by PCR, and the pET29a vector was amplified. The PCR product was subjected to gel electrophoresis (30 min, 120 V). After the product was purified, homologous recombination was performed and transformed into <i>Escherichia coli</i> DH5α. The plate was inverted and cultured at 37°C. After 16 hours, colony PCR was performed on a single colony. The results are shown in the figure. | ||
+ | </p> | ||
+ | <style> | ||
+ | .center-img { | ||
+ | text-align:center; | ||
+ | } | ||
+ | </style> | ||
+ | <div class="center-img"> | ||
+ | <img src="https://static.igem.wiki/teams/5322/wet-lab/pcr-3.png" alt="Colony PCR" width="300"> | ||
+ | <p align="center"><b>Figure 2-1</b> Colony PCR</p> | ||
+ | </div> | ||
− | < | + | <p> |
− | === | + | The colony PCR was successfully inoculated at 37°C, 220rpm, 12-16h, the plasmid was extracted and sent to the company for sequencing. The sequencing results are shown in the figure below. |
− | < | + | </p> |
− | < | + | <style> |
+ | .center-img { | ||
+ | text-align:center; | ||
+ | } | ||
+ | </style> | ||
+ | <div class="center-img"> | ||
+ | <img src="https://static.igem.wiki/teams/5322/wet-lab/cexu-pet29a-j23119-lpp-ompa-giss-tevsite-pd-l1-functional-domain-t7-map.png" alt="Sequencing results" width="300"> | ||
+ | <p align="center"><b>Figure 2-2</b> Sequencing results</p> | ||
+ | </div> | ||
+ | |||
+ | |||
+ | </html> | ||
+ | |||
+ | ==Protein characterization== | ||
+ | <html> | ||
+ | <p> | ||
+ | </p> | ||
+ | </html> | ||
+ | |||
+ | ==Sequence and Features== | ||
+ | <partinfo>BBa_K5322032 SequenceAndFeatures</partinfo> |
Revision as of 13:54, 1 October 2024
Lpp-OmpA-Programmed Cell Death 1 Ligand 1 Functional Domain [Mus musculus] Expression System
Contents
Usage and Biology
During the project, we considered that PD-L1 might be encapsulated by mussel foot protein (Mfp) during expression and release, potentially reducing therapeutic efficacy. To address this, we utilized the surface display system Lpp-OmpA(BBa_K5322035) to present our passenger protein PD-L1 on the outer membrane of E. coli. This would facilitate its binding with PD-1, enhancing effectiveness. Additionally, to demonstrate surface display, we inserted a flexible protein linker and a TEV protease recognition site(BBa_K5322036) between Lpp-OmpA and the PD-L1 functional domain. By incubating the cells with TEV protease, PD-L1 could be cleaved from OmpA. Detection of the PD-L1 functional domain in the supernatant would indirectly confirm the success of surface display. We designed the plasmid pET29a-J23119-Lpp-OmpA-GISS-TEVsite-PD-L1(Functional domain)-T7.
Figure 1-1 Plasmid pET29a-J23119-Lpp-OmpA-GISS-TEVsite-PD-L1(Functional domain)-T7
Construction of the plasmid
The target fragment was amplified by PCR, and the pET29a vector was amplified. The PCR product was subjected to gel electrophoresis (30 min, 120 V). After the product was purified, homologous recombination was performed and transformed into Escherichia coli DH5α. The plate was inverted and cultured at 37°C. After 16 hours, colony PCR was performed on a single colony. The results are shown in the figure.
Figure 2-1 Colony PCR
The colony PCR was successfully inoculated at 37°C, 220rpm, 12-16h, the plasmid was extracted and sent to the company for sequencing. The sequencing results are shown in the figure below.
Figure 2-2 Sequencing results
Protein characterization
Sequence and Features
- 10INCOMPATIBLE WITH RFC[10]Illegal PstI site found at 832
- 12INCOMPATIBLE WITH RFC[12]Illegal NheI site found at 7
Illegal NheI site found at 30
Illegal NheI site found at 790
Illegal NheI site found at 1415
Illegal PstI site found at 832 - 21INCOMPATIBLE WITH RFC[21]Illegal BglII site found at 681
- 23INCOMPATIBLE WITH RFC[23]Illegal PstI site found at 832
- 25INCOMPATIBLE WITH RFC[25]Illegal PstI site found at 832
Illegal NgoMIV site found at 1221
Illegal AgeI site found at 1053 - 1000COMPATIBLE WITH RFC[1000]