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Revision as of 06:34, 1 October 2024
PolyP ---> Pi
Contents
Basic Description
This basic part encodes the PPX gene which is initially from E. coli and we performed codon optimization on. This basic part is designed to facilitate the complete conversion of inorganic polyphosphate (PolyP) to inorganic phosphate (Pi). The PPX enzyme, also known as exopolyphosphatase, is crucial for degrading PolyP into Pi, which is essential for various cellular processes. Inactivation of PPX had no effect on the PolyP level in nuclei in the stationary phase, PolyP level in the nuclei increased 1.5- and 2-fold in the exponential phase in the parent strain and PPX mutant, respectively.
In a sentence, it can reversibly convert PolyP to Pi thoroughly. For the first time, we expressed this element in a strain of S. oneidensis and conducted codon optimization based on S. oneidensis. We tested the effects of the introduction of this element on electricity production and phosphorus metabolism.
Figure 1: Basic function of PPX
Sequence and Features
- 10COMPATIBLE WITH RFC[10]
- 12COMPATIBLE WITH RFC[12]
- 21COMPATIBLE WITH RFC[21]
- 23COMPATIBLE WITH RFC[23]
- 25COMPATIBLE WITH RFC[25]
- 1000COMPATIBLE WITH RFC[1000]
Construct features
In basic parts, only coding sequence is included.
Promoter: Constitutive promoter for continuous expression. We use Lac promoter in our experiment.
RBS: Strong ribosome binding site for efficient translation. We use BBa-B0034 which shows the relatively strongest translation in our experiment.
PPX Coding Sequence: Encodes the exopolyphosphatase enzyme.
Terminator: Efficient transcription terminator to ensure proper mRNA processing. We use a double terminator rrnBT1-T7TE(BBa_B0015) in our experiment.
Figure 2: PCR of target genes before plasmids construction (The extra small fragment in the picture is primer dimer)
Origin (Organism)
The PPX gene was sourced from S. cerevisiae.
Experimental Characterization and results
In our team’s previous research we found that the behavior of the modified S. oneidensis did not reach our expectation and the electron microscopic observation also showed an abnormal morphology of the bacterium. We postulated that too much PPK1 may lead to an abnormal charge distribution in the bacterium thus resulting in a decrease in the bacterium's activity and a reduction in its capacity of electricity production, so we planned to improve the situation by introducing different polyphosphate hydrolases which influence the phosphorus metabolism of S. oneidensis, including PPX, PPK2, NADK, PAP, PPN1.
Electricity production: Using half-cell reaction(electrochemistry) to measure the electricity production ability.
Capacity to polymerize phosphorus: Conducting molybdate assays to determine Pi concentration. We conducted molybdate assays to determine Pi concentration and found that PPX has a bad capacity to polymerize phosphorus.
Details of all experiments can be found at the Experiments section on the Wiki.
Figure 3: Statistical data on electricity production capacity of S. oneidensis with the introduction of different hydrolases
Figure 4: Statistical data on the phosphorus accumulation capacity of S. oneidensis with ''PPX''
Figure 5: ATP level in S. oneidensis with the introduction of different hydrolases
Chasis and genetic context
This part can be normally expressed and function properly in S. oneidensis.
Potential applications
PPX can hydrolyze inorganic polyphosphate (PolyP) to inorganic phosphate (Pi), which can be a crucial part in phosphate metabolism.
References
1.Lichko, L. P., Kulakovskaya, T. V., & Kulaev, I. S. (2006). Inorganic polyphosphate and exopolyphosphatase in the nuclei of Saccharomyces cerevisiae: dependence on the growth phase and inactivation of the PPX1 and PPN1 genes. Biochemistry (Moscow), 71(11), 1171-1175.