Difference between revisions of "Part:BBa K5267043"
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<partinfo>BBa_K5267043 short</partinfo>
 
<partinfo>BBa_K5267043 short</partinfo>
  
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Transpose and respond to calcium ion signals
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<p>Transpose and respond to calcium ion signals</p>
 
<!-- Add more about the biology of this part here
 
<!-- Add more about the biology of this part here
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===Usage and Biology===
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==Usage and Biology==
  
 
<!-- -->
 
<!-- -->
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<span class='h3bb'>Sequence and Features</span>
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===Sequence and Features===
 
<partinfo>BBa_K5267043 SequenceAndFeatures</partinfo>
 
<partinfo>BBa_K5267043 SequenceAndFeatures</partinfo>
  
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===Profile===
 
===Profile===
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Name: P_1*NFAT->IgK->Nluc->bGH_polyA
+
Name: P_1xNFAT->IgK->Nluc->bGH_polyA
 
<br>Base Pairs: 896bp
 
<br>Base Pairs: 896bp
 
<br>Origin: Homo sapiens  
 
<br>Origin: Homo sapiens  
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===Usage and Biology===
+
==Usage and Biology==
−
At present, some people have successfully designed a series of repetitive pseudo-palindromic NFAT reaction element guided by nano-luciferase reporter gene system[1].
+
<p>At present, some people have successfully designed a series of repetitive pseudo-palindromic NFAT reaction element guided by nano-luciferase reporter gene system[1].</p>
−
<br>We developed a series of Ca2-induced NanoLuc reporting systems based on Ca2+ dependent activation of dimer NFAT to monitor the effects of increased Ca2+ concentration in downstream pathways following melatonin receptor response on cells. (figure. 1)
+
<p>We developed a series of Ca2+induced NanoLuc reporting systems based on Ca2+ dependent activation of dimer NFAT to monitor the effects of increased Ca2+ concentration in downstream pathways following melatonin receptor response on cells. (Figure. 1)</p>
−
<br>The system is divided into two parts: the signal response element (encoded by [https://parts.igem.org/Part:BBa_K5267007 Part:BBa K5267007]) and the detection report element (encoded by [https://parts.igem.org/Part:BBa_K2728003 Part:BBa_K2728003]).
+
<p>The system is divided into two parts: the signal response element (encoded by [https://parts.igem.org/Part:BBa_K5267007 Part:BBa K5267007]) and the detection report element (encoded by [https://parts.igem.org/Part:BBa_K2728003 Part:BBa_K2728003]).</p>
−
<br>HEK293 cells were co-transfected with a newly designed NanoLuc reporter expression plasmid to construct a NFAT response element (RE) -directed Nanoluc reporting system. With the NanoLuc reporter gene, we can detect the activation of the NFAT signaling pathway.[2]
+
<p>HEK293 cells were co-transfected with a newly designed NanoLuc reporter expression plasmid to construct a NFAT response element (RE) -directed Nanoluc reporting system. With the NanoLuc reporter gene, we can detect the activation of the NFAT signaling pathway.[2]</p>
 
<html>
 
<html>
  
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<br>'''Figure 1. Construction of a pseudo-palindromic NFAT-response element (RE)-directed Nanoluc reporter system.'''
 
<br>'''Figure 1. Construction of a pseudo-palindromic NFAT-response element (RE)-directed Nanoluc reporter system.'''
  
−
===Special design===
+
==Special design==
−
In order to evaluate the biological implications of heightened intracellular calcium ion (Ca2+) levels, we have engineered a suite of Ca2+-responsive NanoLuc-reporting constructs predicated on the Ca2+-dependent engagement of nuclear factors of activated T cells (NFAT) dimers (Figure 1).
+
<p>In order to evaluate the biological implications of heightened intracellular calcium ion (Ca2+) levels, we have engineered a suite of Ca2+ responsive NanoLuc-reporting constructs predicated on the Ca2+-dependent engagement of nuclear factors of activated T cells (NFAT) dimers (Figure 1).</p>
−
 
+
<p>Given the subdued transcriptional impact of an isolated response element, it is a common practice to introduce multiple tandem iterations of said element into the genomic locus proximal to the reporter gene, thereby amplifying the efficacy of the signaling cascade initiation.[1]</p>
−
<br>Given the subdued transcriptional impact of an isolated response element, it is a common practice to introduce multiple tandem iterations of said element into the genomic locus proximal to the reporter gene, thereby amplifying the efficacy of the signaling cascade initiation.[1]
+
<p>The aforementioned reporter constructs incorporate a variable number of tandem repeats (1x, 5x, 6x, and 7x) derived from the NFAT response element (NFAT-RE) within the interleukin-4 (IL4) promoter sequence (5'-TACATTGGAAATTTTTAT-3'). This particular sequence is anticipated to facilitate the transcriptional activation of the NanoLuc reporter genes (Figure 2).</p>
−
 
+
−
<br>The aforementioned reporter constructs incorporate a variable number of tandem repeats (1x, 5x, 6x, and 7x) derived from the NFAT response element (NFAT-RE) within the interleukin-4 (IL4) promoter sequence (5'-TACATTGGAAATTTTTAT-3'). This particular sequence is anticipated to facilitate the transcriptional activation of the NanoLuc reporter genes (Figure 2).
+
  
 
<html>
 
<html>
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<figure class="figure">
 
<figure class="figure">
 
<div style="width=100%;height=auto;align-items:center">
 
<div style="width=100%;height=auto;align-items:center">
−
<img src="https://static.igem.wiki/teams/5267/i-m-zhangrenjie/50.png" class="figure-img img-fluid rounded"  height="300px">
+
<img src="https://static.igem.wiki/teams/5267/i-m-zhangrenjie/9.png" class="figure-img img-fluid rounded"  height="300px">
  
 
</figure>
 
</figure>
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</html>
 
</html>
 
<br>'''Figure 2. Schematic diagram of MT1 receptor activating the downstream NFAT pathway.'''
 
<br>'''Figure 2. Schematic diagram of MT1 receptor activating the downstream NFAT pathway.'''
−
 
 
<br>Consequently, this system offers a valuable tool for elucidating the dynamic changes within the signaling network following the activation of melatonin receptors.
 
<br>Consequently, this system offers a valuable tool for elucidating the dynamic changes within the signaling network following the activation of melatonin receptors.
  
 
==Function test==
 
==Function test==
−
To substantiate the functionality of the aforementioned constructs, human embryonic kidney 293 cells (HEK293) were co-transfected with expression vectors harboring the newly engineered NanoLuc-reporter genes. At the cellular level, melatonin can affect the activity of calcium channels through its receptors, leading to changes in intracellular calcium concentration. The reporting system is designed to be responsive to oscillations in intracellular Ca2+ concentrations. The optimal configuration of the reporting pathway was ascertained by evaluating and comparing the relative luminescence unit (RLU) expression profiles of the NanoLuc reporter genes, thereby discerning the most efficacious design among the various constructs.
+
<p>To substantiate the functionality of the aforementioned constructs, human embryonic kidney 293 cells (HEK293) were co-transfected with expression vectors harboring the newly engineered NanoLuc-reporter genes. At the cellular level, melatonin can affect the activity of calcium channels through its receptors, leading to changes in intracellular calcium concentration. The reporting system is designed to be responsive to oscillations in intracellular Ca2+ concentrations. The optimal configuration of the reporting pathway was ascertained by evaluating and comparing the relative luminescence unit (RLU) expression profiles of the NanoLuc reporter genes, thereby discerning the most efficacious design among the various constructs.</p>
  
  
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'''Figure 3. NFAT activation in response to calcium ion signaling.'''
 
'''Figure 3. NFAT activation in response to calcium ion signaling.'''
 
   
 
   
−
<br>HEK-293T cells were co-transfected with melatonin receptor plasmid pCJ008(PCMV-MTNR1A) and  plasmids containing different promoters with various copy numbers of NFAT elements pNC008(PNFAT_1-IgK-Nluc), pNC004(PNFAT_5-IgK-Nluc), pNC012(PNFAT_6-IgK-Nluc) and pNC010(PNFAT_7-IgK-Nluc) melatonin stimulation. Data are mean±SD of NanoLuc expression levels measured at 24 h after melatonin stimulation (n = 3 independent experiments).
+
<p>HEK-293T cells were co-transfected with melatonin receptor plasmid pCJ008(PCMV-MTNR1A) and  plasmids containing different promoters with various copy numbers of NFAT elements pNC008(PNFAT_1-IgK-Nluc), pNC004(PNFAT_5-IgK-Nluc), pNC012(PNFAT_6-IgK-Nluc) and pNC010(PNFAT_7-IgK-Nluc) melatonin stimulation. Data are mean±SD of NanoLuc expression levels measured at 24 h after melatonin stimulation (n = 3 independent experiments).</p>
  
  
−
===Reference===
+
==Reference==
 
[1] W. Zhang, T. Takahara, T. Achiha, H. Shibata, and M. Maki, “Nanoluciferase Reporter Gene System Directed by Tandemly Repeated Pseudo-Palindromic NFAT-Response Elements Facilitates Analysis of Biological Endpoint Effects of Cellular Ca2+ Mobilization,” Int. J. Mol. Sci., vol. 19, no. 2, p. 605, Feb. 2018, doi: 10.3390/ijms19020605.
 
[1] W. Zhang, T. Takahara, T. Achiha, H. Shibata, and M. Maki, “Nanoluciferase Reporter Gene System Directed by Tandemly Repeated Pseudo-Palindromic NFAT-Response Elements Facilitates Analysis of Biological Endpoint Effects of Cellular Ca2+ Mobilization,” Int. J. Mol. Sci., vol. 19, no. 2, p. 605, Feb. 2018, doi: 10.3390/ijms19020605.
 
<br>[2] K. A. Strait, P. K. Stricklett, R. M. Kohan, and D. E. Kohan, “Identification of Two Nuclear Factor of Activated T-cells (NFAT)-response Elements in the 5′-Upstream Regulatory Region of the ET-1 Promoter,” J. Biol. Chem., vol. 285, no. 37, pp. 28520–28528, Sep. 2010, doi: 10.1074/jbc.M110.153189.
 
<br>[2] K. A. Strait, P. K. Stricklett, R. M. Kohan, and D. E. Kohan, “Identification of Two Nuclear Factor of Activated T-cells (NFAT)-response Elements in the 5′-Upstream Regulatory Region of the ET-1 Promoter,” J. Biol. Chem., vol. 285, no. 37, pp. 28520–28528, Sep. 2010, doi: 10.1074/jbc.M110.153189.

Revision as of 17:34, 30 September 2024


P_1xNFAT->IgK->Nluc->bGH_polyA

Transpose and respond to calcium ion signals

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    INCOMPATIBLE WITH RFC[25]
    Illegal NgoMIV site found at 190
  • 1000
    COMPATIBLE WITH RFC[1000]


Profile

Name: P_1xNFAT->IgK->Nluc->bGH_polyA
Base Pairs: 896bp
Origin: Homo sapiens
Properties: The transformation of calcium ion concentration is reported by fluorescence


Usage and Biology

At present, some people have successfully designed a series of repetitive pseudo-palindromic NFAT reaction element guided by nano-luciferase reporter gene system[1].

We developed a series of Ca2+induced NanoLuc reporting systems based on Ca2+ dependent activation of dimer NFAT to monitor the effects of increased Ca2+ concentration in downstream pathways following melatonin receptor response on cells. (Figure. 1)

The system is divided into two parts: the signal response element (encoded by Part:BBa K5267007) and the detection report element (encoded by Part:BBa_K2728003).

HEK293 cells were co-transfected with a newly designed NanoLuc reporter expression plasmid to construct a NFAT response element (RE) -directed Nanoluc reporting system. With the NanoLuc reporter gene, we can detect the activation of the NFAT signaling pathway.[2]


Figure 1. Construction of a pseudo-palindromic NFAT-response element (RE)-directed Nanoluc reporter system.

Special design

In order to evaluate the biological implications of heightened intracellular calcium ion (Ca2+) levels, we have engineered a suite of Ca2+ responsive NanoLuc-reporting constructs predicated on the Ca2+-dependent engagement of nuclear factors of activated T cells (NFAT) dimers (Figure 1).

Given the subdued transcriptional impact of an isolated response element, it is a common practice to introduce multiple tandem iterations of said element into the genomic locus proximal to the reporter gene, thereby amplifying the efficacy of the signaling cascade initiation.[1]

The aforementioned reporter constructs incorporate a variable number of tandem repeats (1x, 5x, 6x, and 7x) derived from the NFAT response element (NFAT-RE) within the interleukin-4 (IL4) promoter sequence (5'-TACATTGGAAATTTTTAT-3'). This particular sequence is anticipated to facilitate the transcriptional activation of the NanoLuc reporter genes (Figure 2).


Figure 2. Schematic diagram of MT1 receptor activating the downstream NFAT pathway.
Consequently, this system offers a valuable tool for elucidating the dynamic changes within the signaling network following the activation of melatonin receptors.

Function test

To substantiate the functionality of the aforementioned constructs, human embryonic kidney 293 cells (HEK293) were co-transfected with expression vectors harboring the newly engineered NanoLuc-reporter genes. At the cellular level, melatonin can affect the activity of calcium channels through its receptors, leading to changes in intracellular calcium concentration. The reporting system is designed to be responsive to oscillations in intracellular Ca2+ concentrations. The optimal configuration of the reporting pathway was ascertained by evaluating and comparing the relative luminescence unit (RLU) expression profiles of the NanoLuc reporter genes, thereby discerning the most efficacious design among the various constructs.


Method

We introduced the expression vectors encoding the novel NanoLuc-reporter constructs into HEK293T cells via co-transfection, followed by the application of melatonin to elicit an intracellular calcium ion (Ca2+) response. The experimental paradigm encompassed three replicate experiments alongside a non-transfected control group (BBa_K5267049). Subsequent to a 24-hour exposure to melatonin, the luminescence intensity of the reporter element NanoLuc (measured as relative light units, RLU) was quantified across all experimental cohorts to assess the melatonin activity induced by the treatment.


Results

Figure 3. NFAT activation in response to calcium ion signaling.

HEK-293T cells were co-transfected with melatonin receptor plasmid pCJ008(PCMV-MTNR1A) and plasmids containing different promoters with various copy numbers of NFAT elements pNC008(PNFAT_1-IgK-Nluc), pNC004(PNFAT_5-IgK-Nluc), pNC012(PNFAT_6-IgK-Nluc) and pNC010(PNFAT_7-IgK-Nluc) melatonin stimulation. Data are mean±SD of NanoLuc expression levels measured at 24 h after melatonin stimulation (n = 3 independent experiments).


Reference

[1] W. Zhang, T. Takahara, T. Achiha, H. Shibata, and M. Maki, “Nanoluciferase Reporter Gene System Directed by Tandemly Repeated Pseudo-Palindromic NFAT-Response Elements Facilitates Analysis of Biological Endpoint Effects of Cellular Ca2+ Mobilization,” Int. J. Mol. Sci., vol. 19, no. 2, p. 605, Feb. 2018, doi: 10.3390/ijms19020605.
[2] K. A. Strait, P. K. Stricklett, R. M. Kohan, and D. E. Kohan, “Identification of Two Nuclear Factor of Activated T-cells (NFAT)-response Elements in the 5′-Upstream Regulatory Region of the ET-1 Promoter,” J. Biol. Chem., vol. 285, no. 37, pp. 28520–28528, Sep. 2010, doi: 10.1074/jbc.M110.153189.