Difference between revisions of "Part:BBa K5043006"

Revision as of 09:46, 30 September 2024

pdoA2 from Mycobacterium sp. strain 6PY1

Encodes Phenanthrene ring-hydroxylating oxygenase α-subunit. Presumably catalyses as a complex with pdoB2, phtAc and phtAd the oxidation of Phenanthrene-4-carboxylate to cis-phenanthrene-3,4-dihydrodiol-4-carboxylate. This is the fifth step in pyrene biodegradation. [1]

[1] S.-J. Kim, O. Kweon, R. C. Jones, J. P. Freeman, R. D. Edmondson, and C. E. Cerniglia, "Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology," Journal of bacteriology, vol. 189, no. 2, pp. 464–472, 2007, doi: 10.1128/jb.01310-06.

Sequence and Features

Assembly Compatibility:

10
INCOMPATIBLE WITH RFC[10]
Illegal EcoRI site found at 1285
12
INCOMPATIBLE WITH RFC[12]
Illegal EcoRI site found at 1285
21
INCOMPATIBLE WITH RFC[21]
Illegal EcoRI site found at 1285
Illegal XhoI site found at 448
23
INCOMPATIBLE WITH RFC[23]
Illegal EcoRI site found at 1285
25
INCOMPATIBLE WITH RFC[25]
Illegal EcoRI site found at 1285
Illegal NgoMIV site found at 43
Illegal NgoMIV site found at 723
1000
COMPATIBLE WITH RFC[1000]

@@ Line 3: / Line 3: @@
 <partinfo>BBa_K5043006 short</partinfo>
-Encodes Phenanthrene ring-hydroxylating oxygenase alpha subunit. Presumably catalyses as complex with pdoB2, phtAc and phtAd oxidation of Phenanthrene-4-carboxylate to cis-phenanthrene-3,4-dihydrodiol-4-carboxylate. This is the fifth step in pyrene biodegradation. [1]
+Encodes Phenanthrene ring-hydroxylating oxygenase &#x3B1;-subunit. Presumably catalyses as a complex with pdoB2, phtAc and phtAd the oxidation of Phenanthrene-4-carboxylate to cis-phenanthrene-3,4-dihydrodiol-4-carboxylate. This is the fifth step in pyrene biodegradation. [1]
 [1] S.-J. Kim, O. Kweon, R. C. Jones, J. P. Freeman, R. D. Edmondson, and C. E. Cerniglia, "Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biology," Journal of bacteriology, vol. 189, no. 2, pp. 464–472, 2007, doi: 10.1128/jb.01310-06.