Difference between revisions of "Part:BBa K5184056"
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===Characterization===
 
===Characterization===
 
To increase the expression level and functionality of oxidase and reductases in <i>E. coli</i>, we introduced the spytag-spycatcher system in addition to truncating the N-terminal anchor regions [figure 9A]. Through the formation of an isopeptide bond between the tag and the catcher, introduction of this system links the oxidase and reductases together, thus facilitating efficient electron transfer.  
 
To increase the expression level and functionality of oxidase and reductases in <i>E. coli</i>, we introduced the spytag-spycatcher system in addition to truncating the N-terminal anchor regions [figure 9A]. Through the formation of an isopeptide bond between the tag and the catcher, introduction of this system links the oxidase and reductases together, thus facilitating efficient electron transfer.  
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To test whether the enzymes can be expressed successfully in <i>E. coli</i>, we constructed the plasmids, plasmid pW1-ZIS-NPPS-Mvan4662-st t25ShZPO-sc t76SlCPR2, aiming to test whether the enzymes can maintain their functions after expression and whether the SpyTag can be linked to the SpyCatcher [figure 9B]. Also, we incorporated the plasmids pET28a-sc t25ShZPO, pET28a-st t76SlCPR2 and pET28a-sc t55AtCPR1 to test whether the enzymes can be successfully expressed in <i>E. coli</i>.[figure 1C]
+
To test whether the enzymes can be expressed successfully in <i>E. coli</i>, we constructed the plasmids pET28a-sc t25ShZPO, pET28a-st t76SlCPR2 and pET28a-sc t55AtCPR1 to test whether the enzymes can be successfully expressed in <i>E. coli</i>.[figure 1C]
  
 
<center><html><img src="https://static.igem.wiki/teams/5184/parts/scie88.webp" width="600"/></html></center>
 
<center><html><img src="https://static.igem.wiki/teams/5184/parts/scie88.webp" width="600"/></html></center>
 
<center><b>Figure 1: A. Attachment of SpyTag and SpyCatcher to two cytochrome P450 enzymes; the formation of isopeptide bond between lysine on SpyCatcher and aspartic acid on SpyTag can link the two enzymes together, this proximity allows electron transfer and thus catalysis of the CYP (t25ShZPO) enzyme to occur B. Plasmid construct of pW1-p-ZIS-Mvan4662-NPPS-T-P-SpyTag-t25ShZPO-SpyCatcher-t76SlCPR2-t C. Plasmid constructs of pET28a-SpyTag-t76SlCPR2, pET28a-SpyCatcher-t25ShZPO, and pET28a-SpyCatcher-t55AtCPR1 </b></center>
 
<center><b>Figure 1: A. Attachment of SpyTag and SpyCatcher to two cytochrome P450 enzymes; the formation of isopeptide bond between lysine on SpyCatcher and aspartic acid on SpyTag can link the two enzymes together, this proximity allows electron transfer and thus catalysis of the CYP (t25ShZPO) enzyme to occur B. Plasmid construct of pW1-p-ZIS-Mvan4662-NPPS-T-P-SpyTag-t25ShZPO-SpyCatcher-t76SlCPR2-t C. Plasmid constructs of pET28a-SpyTag-t76SlCPR2, pET28a-SpyCatcher-t25ShZPO, and pET28a-SpyCatcher-t55AtCPR1 </b></center>
  
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We employed GoldenGate Assembly to build the plasmids pW1-ZIS-NPPS-Mvan4662-st t25ShZPO-sc t76SlCPR2, pET28a-sc t25ShZPO, pET28a-st t76SlCPR2, pET28a-sc t55AtCPR1[figure 2A&B] and then transformed the built plasmids into the <i>E. coli</i> strain DH5α. The colony PCR results and sequencing results show that the plasmids are successfully constructed with no mutations.[figure2C&D]  
+
We employed GoldenGate Assembly to build the plasmids pET28a-sc t25ShZPO, pET28a-st t76SlCPR2, pET28a-sc t55AtCPR1[figure 2A&B] and then transformed the built plasmids into the <i>E. coli</i> strain DH5α. The colony PCR results and sequencing results show that the plasmids are successfully constructed with no mutations.[figure2C&D]  
  
 
<center><html><img src="https://static.igem.wiki/teams/5184/parts/scie89.webp" width="600"/></html></center>
 
<center><html><img src="https://static.igem.wiki/teams/5184/parts/scie89.webp" width="600"/></html></center>
 
<center><b>Figure 2: A. Colony PCR results of pET28a-sc t55AtCPR1, pET28a-st t76SlCPR2, and pET28a-sc t25ShZPO B. Alignment of the sequencing results in Fig10A against designed plasmids C. Colony PCR results of pW1-ZIS-Mvan4662-NPPS-st t25ShZPO-sc t76SlCPR2; the insert region is amplified using two sets of primers and their products designated SCIE22E and SCIE22F D. Alignment of the sequencing results of colony PCR products against designed plasmids</b></center>
 
<center><b>Figure 2: A. Colony PCR results of pET28a-sc t55AtCPR1, pET28a-st t76SlCPR2, and pET28a-sc t25ShZPO B. Alignment of the sequencing results in Fig10A against designed plasmids C. Colony PCR results of pW1-ZIS-Mvan4662-NPPS-st t25ShZPO-sc t76SlCPR2; the insert region is amplified using two sets of primers and their products designated SCIE22E and SCIE22F D. Alignment of the sequencing results of colony PCR products against designed plasmids</b></center>
  
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Fermentation of pW1-ZIS-NPPS-Mvan4662-st t25ShZPO-sc t76SlCPR2 in DH5α was induced by IPTG and lasted 48 hours using dodecane as solvent. After the products were collected and underwent GC-MS analysis, we discovered that still, 9HZ and 9H10epoZ were not detected. Instead, only 7epiZ was produced.[figure 3A&B]
 
 
Plasmids pET28a-sc t25ShZPO, pET28a-st t76SlCPR2, pET28a-sc t55AtCPR1 were transformed into E.coli strand BL21(DE3), fermented and induced by IPTG. The SDS-PAGE result shows that only reductases linked with the SpyTag or SpyCatcher could be expressed successfully, and the oxidase was expressed in inclusion bodies.[figure 4]
 
Plasmids pET28a-sc t25ShZPO, pET28a-st t76SlCPR2, pET28a-sc t55AtCPR1 were transformed into E.coli strand BL21(DE3), fermented and induced by IPTG. The SDS-PAGE result shows that only reductases linked with the SpyTag or SpyCatcher could be expressed successfully, and the oxidase was expressed in inclusion bodies.[figure 4]
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−
<center><html><img src="https://static.igem.wiki/teams/5184/parts/scie811.webp" width="600"/></html></center>
 
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<center><b>Figure 3: A. Gas-phase chromatography results for the pET28a-t25ShZPO-t76SlCPR2 culture with dodecane as solvent B. Mass spectrometry and structure elucidation results of the sample</b></center>
 
  
 
<center><html><img src="https://static.igem.wiki/teams/5184/parts/scie810.webp" width="600"/></html></center>
 
<center><html><img src="https://static.igem.wiki/teams/5184/parts/scie810.webp" width="600"/></html></center>

Revision as of 08:23, 30 September 2024


sc-t55AtCPR1

To equip our insecticide with enhanced prevention efficacy against spider mites, we also decide to synthesize 9-hydroxy-zingiberene (9HZ) and 9-hydroxy-10,11-epoxy zingiberene (9H10epoZ), two oxidized products of the monocyclic sesquiterpene 8epiZ. However, the reductase AtCPR1 was originally found in eukaryotic organisms. They were originally immobilized on the ER membrane. However, since E. coli does not have this structure, the 55 amino acid N-terminus ER transit peptide of the reductase is truncated to enhance solubility and expression rate. Also, a SpyCathcer is added, which will form an isopeptide bond with the SpyTag, thus imitating the colocalization of the two enzymes in eukaryotes. Our usage of sc-t55AtCPR1 provide future iGEM teams with a novel method to synthesize an enzyme originally found in eukaryotes through a prokaryotic chassis.

Essential Information

Sequences

Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    COMPATIBLE WITH RFC[1000]

Usage and Biology

"t55AtCPR1 is the truncated version a cytochrome P450 reductase found in Arabidopsis thaliana. It contains two domains, one with binding sites for FAD, flavin adenine dinucleotide, and NADPH, nicotinamide adenine dinucleotide; the other with binding site for FMN, flavin mononucleotide. The two cofactors, FAD and FMN are flavin proteins with multiple variable oxidation states, enabling them to control electron movement. The electron from NADPH is transferred via the two flavin proteins, FAD and FMN in order, and finally transferred to where the reductive power is required, in context of our part collection, ShZPO, a cytochrome P450 oxidase. The 55aa N-terminus ER transit peptide of the oxidase is truncated to enhance solubility and expression rate of the enzyme in E. coli. The SpyTag-SpyCather system was originally found in Streptococcus pyogenes, with its fibronectin-binding protein FbaB containing a domain with a spontaneous isopeptide bond between Lys and Asp. By splitting this domain and rational engineering of the fragments, a peptide (SpyTag) which formed an amide bond to its protein partner (SpyCatcher) in minutes is obtained."

Characterization

To increase the expression level and functionality of oxidase and reductases in E. coli, we introduced the spytag-spycatcher system in addition to truncating the N-terminal anchor regions [figure 9A]. Through the formation of an isopeptide bond between the tag and the catcher, introduction of this system links the oxidase and reductases together, thus facilitating efficient electron transfer. To test whether the enzymes can be expressed successfully in E. coli, we constructed the plasmids pET28a-sc t25ShZPO, pET28a-st t76SlCPR2 and pET28a-sc t55AtCPR1 to test whether the enzymes can be successfully expressed in E. coli.[figure 1C]

Figure 1: A. Attachment of SpyTag and SpyCatcher to two cytochrome P450 enzymes; the formation of isopeptide bond between lysine on SpyCatcher and aspartic acid on SpyTag can link the two enzymes together, this proximity allows electron transfer and thus catalysis of the CYP (t25ShZPO) enzyme to occur B. Plasmid construct of pW1-p-ZIS-Mvan4662-NPPS-T-P-SpyTag-t25ShZPO-SpyCatcher-t76SlCPR2-t C. Plasmid constructs of pET28a-SpyTag-t76SlCPR2, pET28a-SpyCatcher-t25ShZPO, and pET28a-SpyCatcher-t55AtCPR1

We employed GoldenGate Assembly to build the plasmids pET28a-sc t25ShZPO, pET28a-st t76SlCPR2, pET28a-sc t55AtCPR1[figure 2A&B] and then transformed the built plasmids into the E. coli strain DH5α. The colony PCR results and sequencing results show that the plasmids are successfully constructed with no mutations.[figure2C&D]

Figure 2: A. Colony PCR results of pET28a-sc t55AtCPR1, pET28a-st t76SlCPR2, and pET28a-sc t25ShZPO B. Alignment of the sequencing results in Fig10A against designed plasmids C. Colony PCR results of pW1-ZIS-Mvan4662-NPPS-st t25ShZPO-sc t76SlCPR2; the insert region is amplified using two sets of primers and their products designated SCIE22E and SCIE22F D. Alignment of the sequencing results of colony PCR products against designed plasmids

Plasmids pET28a-sc t25ShZPO, pET28a-st t76SlCPR2, pET28a-sc t55AtCPR1 were transformed into E.coli strand BL21(DE3), fermented and induced by IPTG. The SDS-PAGE result shows that only reductases linked with the SpyTag or SpyCatcher could be expressed successfully, and the oxidase was expressed in inclusion bodies.[figure 4]

Figure 4: Liquid culture of pET28a-CYP/CPR in BL21(DE3) was harvested, supernatant and precipitate was collected after centrifugation. S: Supernatant, P: Precipitate